Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 191 / 5e-52 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 187 / 9e-51 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 184 / 8e-50 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G08850 183 / 1e-49 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G49670 179 / 6e-48 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 178 / 1e-47 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 178 / 1e-47 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 177 / 2e-47 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 176 / 6e-47 Leucine-rich repeat protein kinase family protein (.1) AT4G20270 174 / 2e-46 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019035 [exp] 191 / 6e-52 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 190 / 9e-52 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 186 / 2e-50 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10021973 [exp] 181 / 9e-50 AT2G34930 313 / 2e-95 disease resistance family protein / LRR family protein (.1) Lus10012877 [exp] 183 / 2e-49 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023323 [exp] 182 / 4e-49 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 181 / 1e-48 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 179 / 9e-48 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005017 [exp] 177 / 1e-47 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 201 / 1e-55 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.004G049100 [exp] 189 / 2e-51 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.008G033900 [exp] 188 / 2e-51 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G058100 [exp] 188 / 3e-51 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.011G139700 [exp] 185 / 5e-50 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 184 / 7e-50 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G235800 [exp] 184 / 8e-50 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 184 / 1e-49 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258000 [exp] 184 / 1e-49 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.011G104600 [exp] 183 / 2e-49 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10043327 pacid=23167901 polypeptide=Lus10043327 locus=Lus10043327.g ID=Lus10043327.BGIv1.0 annot-version=v1.0 ATGAACTCCGATGTCGTCCCAACAAGTTCAACTTCGTCAAACTCATCAGCTTTGAATGGCACCATACCTTCTTCACTCTTCCACTTATCTCATCTTACTT ATCTTGACCTCAGCTTCAACAACTTCATGTTTTCCAGAATCCCTCCAGGGATTTCCCATCTCAGTGGACTGAGTTACCTCAATCTCTCTAACGCTATGTT CAGTGGCCCCATCACCACAACACAGTTTTCCAACATGACCCACCTGAAAAGTTTCACAGCTTTCAACTGTTTGATACAGGGCTCAATACCTCCTACTCTG AAAAACTTGTCTAATTTACAAACCTTAAAGCTAGACTTCAACAAGCTGACAGGTCAACTACCAAGCTCCCTTTTCACCATGAGAAATCTTGAATTGCTGT CAGTAATGCAGAAGTTTCTCCAGGGATCGATCCCCGATTCGGATACTGATAGTCTCAATTCCATGACAGGAACAATTCCATCTCTGACATCTTTTTTCCA CAGCTCCAGTTATCTGTACATGCTTCATATAGGTAACAACAAGTTTACAGTGAAGTTAGATGAGAATCAAACCGTCAATACTTCAAACTTCAAGCCTCAG TTTTTGGATCTAAGTTCAAGCAACATACAAGGCCGGATCCCAAATTTTCTGTCCAATATGAACCAACTCTCCTACTTGTCTATGGCCAATAACAGCTTAT CTGGAAAAATCCCAGCTTGGCTATTCGATCTTCCAAATCTGGTTTATTTAGATCTCTCTTTCAACAAATTTCAAGACTTTCTACCACCCATTATCAGGAT GAGTTCATCTTTCATGTCGACGACCTTGAACTTAGCAGAAAATTTTCTTCAAGGAGCCATTGCGTTGCTGGAGAATATGGAATCCATCAACTTGTCAGGA AACAATTTCACAGGAAAGATACCACCAAAACTCCAGCTCGGAAAAACAAGATTCGTTTCGTTTTCAAGGAACCGGCTTTCGGGCCAGATTCCACAATCCT TTTGTAGTACCAGAACCAACAATCTAATGCTGCTAGATTTTTTCAACAACAGCTTGTCTGGAACTATCGCAAATAGCTTGGGAAATTGCAGCCATCTCAC TGTCTTGAAGTTAGGAGTCAACAACTTCAATGGGGAGATTCCTGGAGTCCTGGGAAATCCCAAAGATCTGAGTTACCTGGATGTTGCTGATAATCGTTTC GAAGGACCGTTTCCAAGCTTCATATCGAAATTCAAACGACTGGTGGTACTCAAAATGGGACAGAACCATTTCAGTGGAAGGATCCCTCCGATTATCAGAG ATCTAAAGGACGTCCGAATTCTGATGATGGGGTCCAACTTCTTTTCTGAAACAATACCTGCAGATATAAACAAGCTACAAAAGCTCCAAGTGATGGATAT GTCAAACAACATGCTGACAGGAAAGATTCCTGACAGACTTGATGGTCTTGAGATACTAACTTCTCGGCCTCGCGATGGAGACCTTCTCGGATATGTGGTA TCAGCAATGTACATGGGAGTGGAGCTGAGCATGGTTTACAAAGGATTCATGCACGAATTCGATGTTGTAATGACGTAA
AA sequence Show only first row Show all	>Lus10043327 pacid=23167901 polypeptide=Lus10043327 locus=Lus10043327.g ID=Lus10043327.BGIv1.0 annot-version=v1.0 MNSDVVPTSSTSSNSSALNGTIPSSLFHLSHLTYLDLSFNNFMFSRIPPGISHLSGLSYLNLSNAMFSGPITTTQFSNMTHLKSFTAFNCLIQGSIPPTL KNLSNLQTLKLDFNKLTGQLPSSLFTMRNLELLSVMQKFLQGSIPDSDTDSLNSMTGTIPSLTSFFHSSSYLYMLHIGNNKFTVKLDENQTVNTSNFKPQ FLDLSSSNIQGRIPNFLSNMNQLSYLSMANNSLSGKIPAWLFDLPNLVYLDLSFNKFQDFLPPIIRMSSSFMSTTLNLAENFLQGAIALLENMESINLSG NNFTGKIPPKLQLGKTRFVSFSRNRLSGQIPQSFCSTRTNNLMLLDFFNNSLSGTIANSLGNCSHLTVLKLGVNNFNGEIPGVLGNPKDLSYLDVADNRF EGPFPSFISKFKRLVVLKMGQNHFSGRIPPIIRDLKDVRILMMGSNFFSETIPADINKLQKLQVMDMSNNMLTGKIPDRLDGLEILTSRPRDGDLLGYVV SAMYMGVELSMVYKGFMHEFDVVMT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	1.4	0.9894
					Lus10025782 [exp]	1.7	0.9863
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	2.0	0.9869
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	3.5	0.9738
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	7.4	0.9381
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	8.5	0.9105
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10020064 [exp]	8.6	0.7800
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	9.2	0.9105
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	9.8	0.9105
					Lus10017294 [exp]	10.4	0.9105

Compare expression of checked genes

Lus10043327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.