Gene [FLAX] | FIBexDB

Lus10043329 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10004193 [exp]	59 / 4e-11	AT3G52460	95 / 3e-23	hydroxyproline-rich glycoprotein family protein (.1)
Lus10029396 [exp]	48 / 3e-07	AT3G52460	46 / 4e-06	hydroxyproline-rich glycoprotein family protein (.1)
Lus10023047 [exp]	48 / 7e-07	AT4G10850	218 / 4e-71	Nodulin MtN3 family protein (.1)
Lus10003200 [exp]	44 / 9e-06	AT4G10850	255 / 1e-85	Nodulin MtN3 family protein (.1)
Lus10032426 [exp]	44 / 1e-05	AT4G10850	254 / 7e-85	Nodulin MtN3 family protein (.1)
Lus10017302 [exp]	44 / 1e-05	AT4G10850	254 / 4e-85	Nodulin MtN3 family protein (.1)
Lus10021284 [exp]	41 / 0.0002	AT3G52460	164 / 1e-48	hydroxyproline-rich glycoprotein family protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G143100 [exp]	48 / 4e-07	AT4G10850	262 / 4e-88	Nodulin MtN3 family protein (.1)

PFAM info

Representative CDS sequence

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>Lus10043329 pacid=23167985 polypeptide=Lus10043329 locus=Lus10043329.g ID=Lus10043329.BGIv1.0 annot-version=v1.0

ATGGCATTGGAAGTCACTAGCAAGGTCCCATCGAGTGAATACCAATACCCACCACCCAGTTACAACTACAATGGTACTTATTCGCAGGTTCAAGCGCCAC

CGGCGACATATTATAACCACATCGGATACCCGAACCATCAGGAGTTGAAAGCCAGAGGATTCATGATTGGGATGACGGCCTCCTCGTCCTCACCACCTAA

CGCCGTCGGGACAGCCATCGCCGTCATCTACGTAACGATCCTCCTCGTATATTCCGACAAGAGGACGCGTATCGAAATCATGGTCGTCCTCGTCCTCGAG

ATATCATTCATTGTCCTGCTTCTGCTTCTAATCGTGTTTCTTGTCCCCAGCATCGCCAAACGTACCGCCATCGTAGGAGTTGTGGCCGTCGTGTTCTGCA

CTGAATTATTTAAATCAAAATATATCATTCAAATACCTTATCCAAACAACTTGAAAATGGTGTAA

AA sequence

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>Lus10043329 pacid=23167985 polypeptide=Lus10043329 locus=Lus10043329.g ID=Lus10043329.BGIv1.0 annot-version=v1.0

MALEVTSKVPSSEYQYPPPSYNYNGTYSQVQAPPATYYNHIGYPNHQELKARGFMIGMTASSSSPPNAVGTAIAVIYVTILLVYSDKRTRIEIMVVLVLE

ISFIVLLLLLIVFLVPSIAKRTAIVGVVAVVFCTELFKSKYIIQIPYPNNLKMV

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10043329 [exp]	0	1

Lus10043329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.