Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63260 342 / 3e-113 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 337 / 3e-111 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 214 / 3e-64 C3HZnF ZFN1 zinc finger protein 1 (.1) AT1G04990 196 / 1e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G06410 185 / 1e-52 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 184 / 3e-52 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 183 / 6e-52 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G32930 162 / 3e-44 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 130 / 1e-32 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT1G48195 111 / 1e-29 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019481 [exp] 843 / 0 AT5G63260 339 / 6e-112 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 216 / 2e-64 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 215 / 2e-64 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 194 / 4e-56 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 187 / 8e-54 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 177 / 2e-49 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10035248 [exp] 150 / 3e-40 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 149 / 4e-40 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10031528 [exp] 120 / 1e-30 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092500 [exp] 394 / 3e-133 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 389 / 4e-131 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 221 / 1e-66 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 217 / 7e-65 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 216 / 8e-65 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 216 / 9e-65 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 191 / 4e-55 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 189 / 5e-54 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G176300 [exp] 124 / 2e-30 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 116 / 8e-28 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10043330 pacid=23168437 polypeptide=Lus10043330 locus=Lus10043330.g ID=Lus10043330.BGIv1.0 annot-version=v1.0 ATGGAGCAACCTGAATCAGCCAATTCCTTTCACGATCCTAATGGAACCAGCCACATAGAGATACAATCTCCTTCACCTTTGGACTCAACTCAGGATCCAG ATCCTCAACCCTCCTTCCATCATGATGCTCCTCCGCCCGTTCACGCCGCCGGAAAAGATGAAGATGAGCTGCTCCGCCAGCAGGTTGAGAATCAGTTGCA CCTGAGAGGGGAGGAAGAGGAGGAGACGGAGAAGAAGGAGGTGCAAACAGAAAGAGATTTGTGTTATTTGAATGGACAAACAACAGAGGTCGATGAGTCG GAGGAGCATCAGCTCAACAATGGGGAGACTGATGGATTTGGAGAGATGAATGTTGCGTATTTGGATGATCACCACCAGATGGAGAAAGAGGAGGAGGAAG TTGAAGAGGATAGCAAGGATACGAGAAGTAATGGCGGTTGGATGATTACGCAGCCTCAGTTTCCGGTGAGGCCTGAAGCAGAAGATTGCTCTTTCTATAT GAAGACTGGGAATTGCAGATTTGCGTCCAATTGCAAATTTAATCACCCGGTTAAGAGGAAAACCCAGGTGACAAGGGAAAGATTCAAGGAAACTGAAGAA TCTGGGCAGATCGAATGCAAGTATTACTTGAGGACAGGAGGATGTAAGTACGGGAAAGCTTGTAGATTCAGCCACTCAAAAGTGAAAACTGTAGCAGTCC CTGCAAAATCGCCATTGGTGCCATTTCTCGAGTTTAACTTTCTTGGTCTACCAATTCGACTGGGAGAGAAAGAGTGTCCCTTTTATATGCGCAATGGCTC TTGCAAGTATGGTTCGAACTGCAGGTTTAACCATCCTGATCCTACAGTGGTTGGGGGAAATGAACCTTCTTCTGCAGTTGGAAATGGCCCTTCCCTGCAT GCGTCATCACATTCAAACATTCCATCTTGGTCTCCTCCTCCGCCACGACCAGCATTAAATGAGGCTGCTCCTTTTGTCCCAGTTATGTTTCCCCCTAATC AAGGAACCAATTCGCGGAATCTAGATTGGAATGGATATCAGGCTCCGGTATATCCACCACCTGAACGAGTTACGCCTCCTCCTCCTCCGGCATATGTAAT GACTAACCCCTTGTCTGAAACCAATTTTTACACCCGCCACCAGCAACTAATGACAGTAGATGAATACCCTGAGCGACCTGGTCAACCAGACTGCAGCTAT TTCTTGAAAACTGGGGGATGCAAGTACAAGTCCAATTGCAAGTTCAACCACCCAAAGGTTCGGATTGCGAAATCTCCTTCCTGTGTTCTTAGTGACAAGG GACTGCCGTTGAGACCTGATCAAGACGTATGTGCATACTACAGTCGGTACGGGATCTGCAAGTTCGGTCCTGCATGTAGATTCGACCATCCGATCCAAGC GGATTCACCAACGGGATCACTTGATGGTCATCAATTTCATGGATTTGAAAACTCAGCGTCTGATGAAGAAGACCATAGGCTGGCTGAGAAGGCAAAAGAG ATTAAGATATCCAATTAG
AA sequence Show only first row Show all	>Lus10043330 pacid=23168437 polypeptide=Lus10043330 locus=Lus10043330.g ID=Lus10043330.BGIv1.0 annot-version=v1.0 MEQPESANSFHDPNGTSHIEIQSPSPLDSTQDPDPQPSFHHDAPPPVHAAGKDEDELLRQQVENQLHLRGEEEEETEKKEVQTERDLCYLNGQTTEVDES EEHQLNNGETDGFGEMNVAYLDDHHQMEKEEEEVEEDSKDTRSNGGWMITQPQFPVRPEAEDCSFYMKTGNCRFASNCKFNHPVKRKTQVTRERFKETEE SGQIECKYYLRTGGCKYGKACRFSHSKVKTVAVPAKSPLVPFLEFNFLGLPIRLGEKECPFYMRNGSCKYGSNCRFNHPDPTVVGGNEPSSAVGNGPSLH ASSHSNIPSWSPPPPRPALNEAAPFVPVMFPPNQGTNSRNLDWNGYQAPVYPPPERVTPPPPPAYVMTNPLSETNFYTRHQQLMTVDEYPERPGQPDCSY FLKTGGCKYKSNCKFNHPKVRIAKSPSCVLSDKGLPLRPDQDVCAYYSRYGICKFGPACRFDHPIQADSPTGSLDGHQFHGFENSASDEEDHRLAEKAKE IKISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	0	1
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	1.4	0.9113
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	1.4	0.8609
AT5G17210			Protein of unknown function (D...		Lus10007189 [exp]	4.5	0.8075
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	4.9	0.8483
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	8.0	0.8404
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	9.5	0.8162
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	13.3	0.8300
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	14.4	0.8246
					Lus10013986 [exp]	21.1	0.8187
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	24.5	0.7963

Compare expression of checked genes

Lus10043330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.