Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48430 826 / 0 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G46910 198 / 4e-52 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G04240 192 / 3e-49 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT2G34880 140 / 2e-33 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 132 / 8e-31 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G08620 122 / 9e-28 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 122 / 1e-27 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G63490 98 / 4e-20 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 77 / 5e-14 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G06634 59 / 1e-08 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019482 [exp] 2699 / 0 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10030988 [exp] 198 / 6e-52 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 198 / 8e-52 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10037989 [exp] 195 / 6e-50 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10009218 [exp] 192 / 1e-48 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10008063 [exp] 124 / 3e-28 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10042566 [exp] 104 / 5e-22 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 104 / 5e-22 AT3G04490 1370 / 0.0 unknown protein Lus10033903 [exp] 85 / 3e-16 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089000 [exp] 1370 / 0 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 740 / 0 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.010G224700 [exp] 202 / 5e-52 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 202 / 5e-52 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.003G096100 [exp] 192 / 5e-50 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 192 / 1e-49 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.013G046700 [exp] 127 / 3e-29 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 122 / 2e-27 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.011G155100 [exp] 117 / 3e-26 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.001G440900 [exp] 114 / 3e-25 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10043332 pacid=23168307 polypeptide=Lus10043332 locus=Lus10043332.g ID=Lus10043332.BGIv1.0 annot-version=v1.0 ATGGCAGCCTCGGGTGGTTTAGCTGCAGAGAGGGAAGATGTGCTTCAATGGCTGAGAAACCTACCGGTAGCACCAGAGTACCACCCAACTCTGGCCGAAT TCCAAGATCCCATTGCCTACATTTTCAAAATCGAGAAGGAGGCTTCCAAGTATGGTATCTGCAAAATCGTGCCTCCTGTGCTACAATCCCCCAAGAAGAC TGCAATTGCCAACCTCAACCGTTCTCTCGCCGCTCGAGTTGTTGGCGGAGCTTCCTCCTCCTCCTCCCCACCCACATTCACTACCAGGCAGCAGCAGATC GGGTTCTGCCCGAGGAAACCAAGACCCGTTCAGAAGCCCGTGTGGCAGAGCGGGGAGAACTACACTTTCCAGGAGTTCGAGTCTAAGGCCAAGTCTTTCG AAAAATCCTATTTTAAGAAGTATGCGAAGAAAGGGACGACTCTGTCTCCTCTGGAGATCGAAACCCTCTACTGGAAAGCTACTGTCGACAAGCCTTTCTC CGTCGAGTACGCCAATGATATGCCTGGTTCTGCTTTCTCCGTCAAGAAGAATTCTGGGATTGTTGTCGAAGGGATGAGTGTTGGGGAAACTGAGTGGAAT ATGAGAGGTGTTGCTAGGGCTAAAGGTTCACTGCTTAGGCATATGAAGGAGGAGATTCCTGGTGTCACTTCCCCTATGTTGTATATAGCTATGATGTTTA GCTGGTTCGCTTGGCATGTTGAGGACCACGATTTGCACAGCTTGAACTACATGCACATGGGAGCTGGCAAGACTTGGTATGGTGTCCCCAAGGAGGCTGC TGTTGCTTTTGAGGAGGTCGTCAGGGTTCATGGCTATGGTGGAGAAATCAATCCTCTTCGTGAGTGCTTTTTTCAGCAGAATTCATGTCTTTCTGTTGAC CATCTTCGAAGACTGCGTCTGATATTGGTTCATCATATGTTAAAGTTAGTGTCTGTAATGTCTGGACTAATATCATTGTTCTGTACTTCTTGTCAGTTAC ATTTGCCGTTCTGGGTGAGAAGACCACAGTTATGTCCCCGGAAGTATTCATTAGGGCAGGTGTTCCATGCTGCAGGGTTTAACTGCGGGGAGGCTTCTAA TATTGCAACTCCAGAATGGCTGAGATTTGCTAAGGAAGCTGCTGTTAGAAGAGCTTCCATCAATTATCCTCCTATGGTGTCTCATTTTCAGTTACTCTAT GATCTTGCATCTGAGTTATGTTCAAGATTTACAACAAACGCTAGTGCTAAGCCAAGGAGTTCTAGACTAAAGGATAAGCAAAAGGGTGAATCGGAAATGG TGACCAAAGAGATTTTAGTGGAAAATGTCATGAATAATAACAACTTACTTCATAATCTTGGAAAAGGGGCCTCAGTTGTTCTTCTTCCCTGGAGTTCTTC AGATATATCTCTCTGCTCAAATTACCGTTTTGGATCACAGTTTGTAAAACCATCATTTGGGTTCCGTGCTCACAAGGGTTTCATGGGACAATCTAAAGTC TCTAGTTATGATGACTCCAAACCAGACAAGATAGATGTGATAAATCAAGTTAAAGGCATGTATCCTCTGAAAGCAAAGTTTGGCTCTTCATACGAAGGCA AGACATGTCCCGTTTTAGGCAAGAGCGGAAACTTGCACAACCCCCACCCAGAAACTGAAAGGATGGCGATGCTTGACAATAAGTCTCCTGATCAGAGACT GTTTTCATGTGTCACCTGTGGAATTTTGAATTATGATTGTGTTGCTATTATTCAACCCAGAGAAGCCGCTGCAAGATACTTCATGTCAGCTGATTGTAGC TTCTTTAATGACTGGACTGTTGTTTCTGGTGCTGGTAAAGAAGCATTCATTGCTGCAGATGAAGATGCAGGAGGGGCTGAGGATAGCATTGCACATGGAC CTCATGATATCCTTGAATCTGAAAATAACCACAAACAGATAATCGATCTGAGTAGTGGTGCAGTTTCTGATACTAAACTAAAACTTGAAACGTCAGCACT TGGTCTTTTAGCTTTAAATTATGGAGATTCATCCGACATGGATGAAGAGCCAGGTTTATCTCCCGATAATAATAACACATATGATAGGATGAATAGTTTA TCAGAAGGTAACAATCAGTCTCAGGACTCTGCTTCACCATCCTTTGAGGAAGAACTGCCTGATGGTACATCTCGACACAAATTTGATTGCGGGAACAGAG TGTTTCTCCAGGGTGTAGAGAATAATGTGCAACAATTAGAAAATACCGATCCTTTGCTTGCTCCTACATGCGATGAAGACTCTTCCCGTATGCATGTCTT CTGCCTTGAGCATGCTGTTGAAGTAGAACAACGACTTCGCCAAATAGGAGGAGTTCATGTGTTTCTTCTCTGCCATCCAGATTATCCTGGGGTAGAAGAG CAGGCAAAGTTAGTTTCCGAAGAACTGCGGGTTGATTACTTGTGGAAGCAAACGAATTTCAAGGATGCAAGCCTAGATGATGAACAGAGGATCCAATCAG TTCTTGATAGCGAAGAGGCCATTCCAGGGAACAGCGACTGGGCTGTGAAACTGGGGATCAATCTTTTCTACAGTGCTAATCTTAGTTGGTCACCGCTTTA TAGTAAGCAGATGGCATACAATTCCGTGATATACAATGCATTTGGCCGCACCTCTCCAGGAAACTCGCCTAAAAAGTCTAATAATGTCTCTGGACGGAGG AACGGTAGGCAGAGAAAGGCAGTGGTTGGTAAATGGTGTGGCAAAGTTTGGATGTCAAATCAAGTCCATCCGTTTCTAACAAATTGGGATTCCCAGTATC AAGACCAGGAGCAAGAACCAGAAAAGCTTGATGTTCAACAACCACAAGTCTTTGAAACAGAAACTTTAAGAAAATCTGTCAAATCTGTGAAGAAAAGAAA ACCTAAAGCCAAGAGTGCATCTGTTAGGGAAGTGGCTCTTGCAGAGACTGAGGAGATTCATAAGCCACTCGGGAGGTTAAACAACAGGAAGCGAACAAAT TCAGTCGAGGAGCATGAGAGCTTGCATAGAAGCAAGCTGGCCAGATCTGCTGTGAGTGAGTATGTAGATTCTGATGATTCTTTGGGAGACGAATCTCTTC AGCAGCAGCACAAGAAAGCTGTAAGCCAACAAACTAGAGAATTTGTCTGTGAACCTGCAGACTTCTACGACACAGTTCATAAAACCTCTCAAAAACAACG CAGAACTCCTAGAGTCTGTCAGGCTAAATATGTTCAGAAAGAATCTGCTTCAGATGATTCTTTAGAAGAAAACATGCTTCAATGGCATGGAAGGGTTCCT AGAAGTAAGCAACAAATGAAACTAATGGACAGAGAAGAAGTTTCCGGGCTTCCACTAGAAGAGAGTTCTCAGAAATCCCATAAGGTCTATAAAAGGAGAA AGGGAAAATATGCCGAGAAGGAATATGCAGCGCCAAGCGAGTCGACAGAAAATGTTTTTCATAGACAGAACAGCTCGAATCCTGAAGGCAATCAGTTCGA AGAAGCTGAGTTTGATGATTCTCTAGAAGAAAGTGTTAAGTGGCAAACTGCGAGCTTTTCCAGGGAAGATTTAATGTCTGATGATTCAGTGTACAATGAT GATGCTCATCAGCAAAGGGGAACTGTTGGAGGCAAAAATCCCTCGTCTTATTCAGCTGAAGATGCAGTATCAGATGATCCGTTAGATACGGATACCCAGC AGCTGGAGAGAACCATTCCTCGAATTGAAAGGTCTAGATCTTTTGGAGATGAAGATGCAGTTTCAGATGACCCGTTGCAGGAGGATGATATGGAACAGAA CTTCAGCAGCATCCACCAAAACAAGAGGACCAAATTTGCAGAAAGACAGGAGGATATTACAGATGAGCTGCGAAATAGTAGTACTCGTCGCTATCCAAGG AAGACCCCAAGAGGGAAGCACGGTAGATTCATTAAGGGGGAGATTGAAGATGCAGATTCTGATCATTTGGTGGGAGAGGATTTCAATGAGCAGCAAGGGA GGACACTAGGAAGCAAGCAGAAAAAACATACTAGAGGTCGAACTCCTCCATCGGGGAAGAAGCCTATGCAGAAAGAGACTCCTTTGAGGCCGGTTAAGCT GGAAACTCCTCGCATGAGGAACAAGGGTGTGCAGAAGAATGCTTACCAGTTTGATGATGTCCCGGTCGATGATGATGAAGAAGAGGGTGGACCTAGCTCA CGCCTAAGGAGAAGGCCCTCGAAACCTACAAAAGTGTCGATAACTAAATCAAAAGAGATTCAGCAGCAGCAAAGCAGCAGGATTAAAGTGAAGTCTGCTC CGGCTGGGAAGGCCCCTGCTGGACGAAAGGGTGGAAAAAACAAAGTGGAGGATGGACTGTTCCAGTGTGATATTGACGGTTGCACCATGGGTTTTAGCTC AAAGCAAGAGCTCAATGTCCACAAAAGAAACATTTGTCCAGTGAAGGGATGCGGTAAGGTGTTCTTCTCACATAAGTATTTAGTGCAGCATCGACGAGTT CATGTAGACGATAGGCCTCTCAAGTGCCCATGGAAAGGCTGCAAGATGGCGTTCAAGTGGGCATGGGCGAGGACTGAACACATCAGGGTTCACACGGGTG CACGGCCTTACGTGTGTGCAGAAGAAGGTTGCGGTCAGACATTCCGGTTTGTGTCGGATTTCAGCCGTCACAAGAGGAAGACTGGCCATTCAGGCAGGAA AGACAGCGAGTAA
AA sequence Show only first row Show all	>Lus10043332 pacid=23168307 polypeptide=Lus10043332 locus=Lus10043332.g ID=Lus10043332.BGIv1.0 annot-version=v1.0 MAASGGLAAEREDVLQWLRNLPVAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVLQSPKKTAIANLNRSLAARVVGGASSSSSPPTFTTRQQQI GFCPRKPRPVQKPVWQSGENYTFQEFESKAKSFEKSYFKKYAKKGTTLSPLEIETLYWKATVDKPFSVEYANDMPGSAFSVKKNSGIVVEGMSVGETEWN MRGVARAKGSLLRHMKEEIPGVTSPMLYIAMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPKEAAVAFEEVVRVHGYGGEINPLRECFFQQNSCLSVD HLRRLRLILVHHMLKLVSVMSGLISLFCTSCQLHLPFWVRRPQLCPRKYSLGQVFHAAGFNCGEASNIATPEWLRFAKEAAVRRASINYPPMVSHFQLLY DLASELCSRFTTNASAKPRSSRLKDKQKGESEMVTKEILVENVMNNNNLLHNLGKGASVVLLPWSSSDISLCSNYRFGSQFVKPSFGFRAHKGFMGQSKV SSYDDSKPDKIDVINQVKGMYPLKAKFGSSYEGKTCPVLGKSGNLHNPHPETERMAMLDNKSPDQRLFSCVTCGILNYDCVAIIQPREAAARYFMSADCS FFNDWTVVSGAGKEAFIAADEDAGGAEDSIAHGPHDILESENNHKQIIDLSSGAVSDTKLKLETSALGLLALNYGDSSDMDEEPGLSPDNNNTYDRMNSL SEGNNQSQDSASPSFEEELPDGTSRHKFDCGNRVFLQGVENNVQQLENTDPLLAPTCDEDSSRMHVFCLEHAVEVEQRLRQIGGVHVFLLCHPDYPGVEE QAKLVSEELRVDYLWKQTNFKDASLDDEQRIQSVLDSEEAIPGNSDWAVKLGINLFYSANLSWSPLYSKQMAYNSVIYNAFGRTSPGNSPKKSNNVSGRR NGRQRKAVVGKWCGKVWMSNQVHPFLTNWDSQYQDQEQEPEKLDVQQPQVFETETLRKSVKSVKKRKPKAKSASVREVALAETEEIHKPLGRLNNRKRTN SVEEHESLHRSKLARSAVSEYVDSDDSLGDESLQQQHKKAVSQQTREFVCEPADFYDTVHKTSQKQRRTPRVCQAKYVQKESASDDSLEENMLQWHGRVP RSKQQMKLMDREEVSGLPLEESSQKSHKVYKRRKGKYAEKEYAAPSESTENVFHRQNSSNPEGNQFEEAEFDDSLEESVKWQTASFSREDLMSDDSVYND DAHQQRGTVGGKNPSSYSAEDAVSDDPLDTDTQQLERTIPRIERSRSFGDEDAVSDDPLQEDDMEQNFSSIHQNKRTKFAERQEDITDELRNSSTRRYPR KTPRGKHGRFIKGEIEDADSDHLVGEDFNEQQGRTLGSKQKKHTRGRTPPSGKKPMQKETPLRPVKLETPRMRNKGVQKNAYQFDDVPVDDDEEEGGPSS RLRRRPSKPTKVSITKSKEIQQQQSSRIKVKSAPAGKAPAGRKGGKNKVEDGLFQCDIDGCTMGFSSKQELNVHKRNICPVKGCGKVFFSHKYLVQHRRV HVDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSGRKDSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	0	1
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	1.0	0.9829
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	2.2	0.9416
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	3.0	0.9488
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	3.2	0.9502
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	3.5	0.9430
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	4.5	0.9351
AT4G31880			unknown protein		Lus10018332 [exp]	5.9	0.9399
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	6.0	0.9402
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	7.5	0.9376
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	8.2	0.9265

Compare expression of checked genes

Lus10043332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.