Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48425 547 / 0 DNAse I-like superfamily protein (.1) AT2G41460 107 / 2e-25 ARP apurinic endonuclease-redox protein (.1.2) AT3G60950 61 / 6e-10 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 46 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019483 [exp] 710 / 0 AT3G48425 556 / 0.0 DNAse I-like superfamily protein (.1) Lus10000437 [exp] 100 / 5e-23 AT2G41460 541 / 0.0 apurinic endonuclease-redox protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088900 [exp] 593 / 0 AT3G48425 557 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G042000 [exp] 101 / 3e-23 AT2G41460 590 / 0.0 apurinic endonuclease-redox protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10043333 pacid=23168105 polypeptide=Lus10043333 locus=Lus10043333.g ID=Lus10043333.BGIv1.0 annot-version=v1.0 ATGAAACGATTCTTCAAGCCGATAGAGAAGGATGGGTCTGCGAAGAAACCTGCGCTAGAACAACAACAACAACAACGACAACGACAAGGCAATGGCGAAA AGCGAGACGGGATAGCAGAGTCGGGAGCTGGATTGCCGAATCAGTACAAGCAGCCGTTGAAGTTCGTCATTTGGAATGCTAATAGCTTTCTTCTTCGAGT CAAAAACAACTGGCCCGAGTTTTCAAAGCTCGTCTCCCGCATTGACCCTGATGTCATCGCCGTCCAGGAAGTAAGAATGCCAGCTGCTGGTTCAAAAGGT GCACCCAAGAACCCAGGAGAGATAAAAGATGATACAAGCTCTTCACGGGAGGAAAAACAGTTACTGATGCGTGCTCTTTCTCGTCCGCCATTTGGAGATT ATCGTATTTGGTGGTCCCTTGGTGACACCAAGTATGCTGGAACTGCCTTGTTGGTAAAGAAGTGTTGCCAGCCTTTGAAGGTCTCTTTCTCACTTGATAG AACAGGTTCTAAACATGAACCGGATGGGCGAGTTATTTCAGCTGAATTTGAGACGTTCCGCCTATTGAATACGTATGCACCGAATAATGGATGGAAAGAC GAGGAAAACGCATTTCAAAGGAGAAGGAAATGGGATAAAAGGATGCTAGATTTTGTTCTTCAAGCATCCGACAAACCTTTGATATGGTGCGGTGATCTGA ATGTTAGTCTAGAAGACATAGATGTGAGTCATCCAGAATTTTTCAGTACGGCAAAGCAAAATGGTTACATACCTCCCAATGAAGAGGATTGCGGGCAGCC TGGATTTACCCTGAATGAGAGGAAGCGATTTGGTGCAATACTGAAAGAGGGGAAACTCACAGATGCATACCGATTCTTGCACAAGGAAAAGGATATGGAG CATGGTTTCTCATGGTCTGGGAATCCCATTGGGAAGTATCGAGGGAAAAGGATGCGGATAGATTATTTTTTGGTCTCTGAGAAACTAAGAGATCGGATTG TTTCCTGTGAGATGCATGGCCAAGGAATTGAACTAGAAGGCTTTTACGGAAGTGACCACTGTCCAGTTTCGCTTCAACTATCACCAATCACGTCAGATGC CAACGGAAGCTAA
AA sequence Show only first row Show all	>Lus10043333 pacid=23168105 polypeptide=Lus10043333 locus=Lus10043333.g ID=Lus10043333.BGIv1.0 annot-version=v1.0 MKRFFKPIEKDGSAKKPALEQQQQQRQRQGNGEKRDGIAESGAGLPNQYKQPLKFVIWNANSFLLRVKNNWPEFSKLVSRIDPDVIAVQEVRMPAAGSKG APKNPGEIKDDTSSSREEKQLLMRALSRPPFGDYRIWWSLGDTKYAGTALLVKKCCQPLKVSFSLDRTGSKHEPDGRVISAEFETFRLLNTYAPNNGWKD EENAFQRRRKWDKRMLDFVLQASDKPLIWCGDLNVSLEDIDVSHPEFFSTAKQNGYIPPNEEDCGQPGFTLNERKRFGAILKEGKLTDAYRFLHKEKDME HGFSWSGNPIGKYRGKRMRIDYFLVSEKLRDRIVSCEMHGQGIELEGFYGSDHCPVSLQLSPITSDANGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	0	1
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	1.0	0.8801
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	1.4	0.8694
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	4.2	0.8373
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	4.5	0.8222
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	7.5	0.7861
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	7.7	0.8081
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	10.5	0.8126
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	12.6	0.7541
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	14.2	0.8069
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	15.2	0.7946

Compare expression of checked genes

Lus10043333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.