Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63120 694 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 633 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 402 / 6e-133 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 394 / 4e-129 DEAD box RNA helicase family protein (.1.2) AT3G06480 385 / 2e-121 DEAD box RNA helicase family protein (.1) AT1G20920 353 / 1e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 348 / 2e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 314 / 7e-100 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 311 / 2e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 291 / 1e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019484 [exp] 817 / 0 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 638 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 637 / 0 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 398 / 1e-130 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 393 / 1e-128 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 394 / 7e-124 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 379 / 5e-122 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 372 / 2e-115 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 354 / 3e-112 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084600 [exp] 723 / 0 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 715 / 0 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 646 / 0 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 409 / 2e-133 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 409 / 4e-133 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 393 / 9e-124 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G194600 [exp] 359 / 4e-114 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 361 / 1e-111 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 353 / 9e-109 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 319 / 2e-101 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10043334 pacid=23167910 polypeptide=Lus10043334 locus=Lus10043334.g ID=Lus10043334.BGIv1.0 annot-version=v1.0 ATGAACCCTTATGATCCTAGATACAACGACCCAGAATCCTACCTTCATCGTCGCAGTGATTTCATTGGACCTCCTCCAATGATAGGCGGTGGTCCGTATC CGCGGGGAGGACCAATGCCCTACGGTGGGCATCCCCCACCACTGTCATTTGCAACAGGAGGCGGTCCTGGGATTTCCGACGGATATCCACCTTTTCACCC TCCTGCCGGTAGGTTTGATATTGGGCGTGGAGGCGGGGGCAGTAGGGGATATGGCGATGGTGGTGGTCGTTTCGATGGTGGTCGTTCCGGTGGCGGAAGG GGCCGTGACGGCGGTTATTACGGCGGTGGACGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGAGTTATGGGGGAAGGGGAGGAGGTAGGTTTGGCGGTG GAGCTCCGCGAGGCGATTTAGATAATATCTCACTCCCCAGTCAGGACTTTGATAATTTGGTTCCGTTTGAGAAGAGTTTCTACTTGGAGAGTCCTGCAGT CCGGGCTATGTCCGAGCAGGACGTCATGATTTATCGATCAAGAAGGGACATTACTGTTGAAGGGTTTGAGGTGCCTAGGCCAATTCAGATGTTTCAGGAG GCCAACTTCCCAGACTACTGCCTAGAAGTGATTGCTAAGCTCGGTTTTGTGGAGCCTACACCAATTCAGGCTCAAGGCTGGCCCATGGCTCTAAAGGGTA GAGATTTGATTGGTATTGCCGAGACAGGTTCTGGGAAGACACTGGCTTACCTCTTGCCTGCTCTAGTTCATGTTAGCGCACAACCTCGATTGGCCCAAGG TGATGGTCCAATTGTATTGGTACTGGCTCCTACAAGAGAATTAGCAGTTCAAATTCAAGAAGAGGCTGCAAAGTTTGGTGCCCGTGCTAATACTAGGAGT ACTTGTGTTTATGGTGGTGCTCCAAAAGGCCCCCAGATTCGTGATCTCAGAAGAGGTGTTGAGATTGTCATTGCTACCCCGGGTCGTCTTATTGATATGT TGGAAGCTCAACATACAAACTTGCGAAGGGTTACGTACTTAGTGTTAGATGAGGCTGACAGGATGTTGGACATGGGATTTGAGCCCCAGATCAGGAAGCT GATATCTCAAATCCGACCTGATAGACAAACATTGTATTGGAGTGCGACATGGCCAAAAGAAGTTGAAACATTAGCTAGGCAGTTTCTGCATAATCCATAC AAGGTGATTATTGGCTCGCCAGATTTGAAAGCCAACCAGTCAATAATTCAAGTAATTGAAGTTGTCACAGAGGTTCAGAAGTACAATAGACTGGTCAATC TTCTGAAAGAAGTAATGGATGGTAGCAAGATTCTCATATTTACAGAGACAAAAAAGGGCTGTGACCAAATCACAAGGCAATTGAGAATGGATGGTTGGCC TGCTCTATCCATCCATGGAGACAAAAATCAGGCTGAAAGGGATTGGGTTCTTTCTGAATTCAAGAGCGGCAGAAGTCCTGTAATGACTGCCACTGATGTT GGTTCTCGTGGTCTTGATGTGAAGGATATAAAATGTGTGATCAACTATGACTTCCCTACCAGTCTGGAAGACTATATTCACAGGATAGGGCGAACTGGGC GTGCTGGGGCAAAAGGAACTGCCTTTACCTTCTTTACACATGCAAATGCGAAATTTGCAAGAGAGCTCATGAAGATCTTGGCAGAAGCACGGCAGATCGT GCCTCCGCCATTGTCGGAACTAGCAAGAGCATCTGGTTCTTTTGGAGGAGGAAACTTCAGATCCAGGGGACGAGGAGGAGGTGGTGGCTATGGCAACCGA TCGGGCTCTAATATGACGCTTCTCGGATCCAAGCGGCACTGGTAG
AA sequence Show only first row Show all	>Lus10043334 pacid=23167910 polypeptide=Lus10043334 locus=Lus10043334.g ID=Lus10043334.BGIv1.0 annot-version=v1.0 MNPYDPRYNDPESYLHRRSDFIGPPPMIGGGPYPRGGPMPYGGHPPPLSFATGGGPGISDGYPPFHPPAGRFDIGRGGGGSRGYGDGGGRFDGGRSGGGR GRDGGYYGGGRGGGGGGGGGRSYGGRGGGRFGGGAPRGDLDNISLPSQDFDNLVPFEKSFYLESPAVRAMSEQDVMIYRSRRDITVEGFEVPRPIQMFQE ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAQGDGPIVLVLAPTRELAVQIQEEAAKFGARANTRS TCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPKEVETLARQFLHNPY KVIIGSPDLKANQSIIQVIEVVTEVQKYNRLVNLLKEVMDGSKILIFTETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLSEFKSGRSPVMTATDV GSRGLDVKDIKCVINYDFPTSLEDYIHRIGRTGRAGAKGTAFTFFTHANAKFARELMKILAEARQIVPPPLSELARASGSFGGGNFRSRGRGGGGGYGNR SGSNMTLLGSKRHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	0	1
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	2.6	0.7715
AT1G15780			unknown protein		Lus10025452 [exp]	4.9	0.7160
AT1G17665			unknown protein		Lus10006153 [exp]	10.2	0.6993
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	13.0	0.7042
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	17.4	0.6591
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	17.7	0.6742
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	18.3	0.6367
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	19.8	0.7086
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	21.3	0.7057
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	25.9	0.6046

Compare expression of checked genes

Lus10043334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.