Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 84 / 2e-18 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 82 / 8e-18 F-box family protein (.1) AT3G23880 76 / 6e-16 F-box and associated interaction domains-containing protein (.1) AT4G22390 76 / 8e-16 F-box associated ubiquitination effector family protein (.1) AT3G16210 64 / 7e-12 F-box family protein (.1) AT3G07870 58 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT1G71320 53 / 7e-08 F-box family protein (.1) AT3G62380 52 / 7e-08 unknown protein AT1G33530 44 / 5e-05 F-box family protein (.1) AT1G32600 40 / 0.0007 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040463 [exp] 280 / 3e-93 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 259 / 3e-85 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10010910 [exp] 248 / 5e-81 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10031480 [exp] 238 / 9e-77 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 238 / 9e-77 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 238 / 9e-77 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027028 [exp] 150 / 1e-45 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040338 [exp] 111 / 1e-28 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10015170 [exp] 91 / 9e-23 AT5G50220 46 / 2e-06 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035500 [exp] 91 / 9e-21 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 81 / 2e-17 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 74 / 5e-15 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 67 / 1e-12 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 66 / 3e-12 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.017G058900 [exp] 62 / 4e-11 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.014G162600 [exp] 62 / 6e-11 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.006G013200 [exp] 61 / 1e-10 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 60 / 2e-10 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 60 / 3e-10 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043335 pacid=23167992 polypeptide=Lus10043335 locus=Lus10043335.g ID=Lus10043335.BGIv1.0 annot-version=v1.0 ATGGGTTCGTGCCACGGTCTGGTATGCTTTGCTCTTTTGAACTATCCATATGATTTTGTAATACTTAACCCATCAACAGGGGAGCGCCACACTCTGAGCA ATCCCTCAAAGGAAGGAAAAGCAGATGATAAACTGAAAGGGTATGGGTTCGGGTACGATGAGTTATCAGACGATTACAAGGTGGTCAGGATTTTAGAAAC AAGGTCTGATCGTCGCAATGGTTCCTACATTGCTGAAATTTACGGAGTCAGGTCCAAGGGTTTCTTTAGGACAATTCCTTTGCCCACTGCAGATTGGACG AACTGCGATCGTAAGTTCATTGGGGTTTTTGTTGGCAGCTCGTTACATTGGTGTACCCGGCATTCCGGTAACACTGTTCCTGACCATGTCATACATGCAA TTGATCTTGTGTCCAACACTTATCGCCAGCAACAGTTGCCAGAAACCTGTTTCCATCAAGCTTGGTTGTTGAATGCTGGAAGTGTTGACAAGCGCTTGTG TGTCTCTGGTTTCCTTAAGGAGGAGAAGAAAATTGGCATGTGGGTTATGGAGGAATACTGGAATCTTGAATCGTGGAATAGGATTTATTGCGTTCCGTAT GTTATTGATCGGCGGGTGTGCCCTATGGCTGTAACTTCCGTGGGGAGTAATGTAGATAAGATTCTCTTGCTGGTTAATAATGAGATACTTGCTTGGTTTG ATCCGGATGCAGATGAGACTCTCCTTGAGGATCGATAA
AA sequence Show only first row Show all	>Lus10043335 pacid=23167992 polypeptide=Lus10043335 locus=Lus10043335.g ID=Lus10043335.BGIv1.0 annot-version=v1.0 MGSCHGLVCFALLNYPYDFVILNPSTGERHTLSNPSKEGKADDKLKGYGFGYDELSDDYKVVRILETRSDRRNGSYIAEIYGVRSKGFFRTIPLPTADWT NCDRKFIGVFVGSSLHWCTRHSGNTVPDHVIHAIDLVSNTYRQQQLPETCFHQAWLLNAGSVDKRLCVSGFLKEEKKIGMWVMEEYWNLESWNRIYCVPY VIDRRVCPMAVTSVGSNVDKILLLVNNEILAWFDPDADETLLEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	0	1
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	6.9	0.7960
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	8.8	0.7913
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	9.2	0.7694
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	12.4	0.7744
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	14.9	0.7650
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002682 [exp]	16.5	0.7185
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	23.4	0.7713
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	28.6	0.7351
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	30.7	0.7500
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	32.9	0.7586

Compare expression of checked genes

Lus10043335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.