Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 72 / 9e-17 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 72 / 1e-16 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 69 / 2e-15 DIC3 dicarboxylate carrier 3 (.1) AT5G19760 40 / 3e-05 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015897 [exp] 92 / 4e-24 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10015570 [exp] 73 / 1e-18 AT4G24570 100 / 5e-27 dicarboxylate carrier 2 (.1) Lus10035936 [exp] 76 / 2e-18 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10025725 [exp] 75 / 6e-18 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10024540 [exp] 72 / 2e-16 AT5G09470 91 / 3e-19 dicarboxylate carrier 3 (.1) Lus10009271 [exp] 52 / 6e-10 AT4G24570 138 / 7e-41 dicarboxylate carrier 2 (.1) Lus10030361 [exp] 41 / 2e-05 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 41 / 3e-05 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104400 [exp] 84 / 6e-21 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 82 / 2e-20 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.005G157300 [exp] 82 / 2e-20 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 81 / 1e-19 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 80 / 1e-19 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 80 / 1e-19 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 80 / 2e-19 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045400 [exp] 80 / 2e-19 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.003G220400 [exp] 42 / 6e-06 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.001G004500 [exp] 40 / 2e-05 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043336 pacid=23168298 polypeptide=Lus10043336 locus=Lus10043336.g ID=Lus10043336.BGIv1.0 annot-version=v1.0 ATGAACATCCTAAGGTCTGAAGGGGTCGTCGCTCTGTCCTTCGGTGTCTCCGCCACCATCCTCCGTCAGACTCTCTACTCCACCACCAAGAAGGGTCTCT ACGACGTCCTCAAGACCAAGTGGACCGATGCTCAGACTCGTAACATGCCTCTTTTCAGCAAAATCATATCATGCTGGCGGGACCGGACCGAAAGTGGGGA ACCCTGCCGACAGCGGAGCGATGGATTGTGCGATTAA
AA sequence Show only first row Show all	>Lus10043336 pacid=23168298 polypeptide=Lus10043336 locus=Lus10043336.g ID=Lus10043336.BGIv1.0 annot-version=v1.0 MNILRSEGVVALSFGVSATILRQTLYSTTKKGLYDVLKTKWTDAQTRNMPLFSKIISCWRDRTESGEPCRQRSDGLCD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10043336 [exp]	0	1
AT5G24890			unknown protein		Lus10009793 [exp]	4.5	0.9457
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	8.5	0.9415
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	11.3	0.9314
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	13.5	0.9441
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	13.7	0.9369
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	14.4	0.9409
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	16.2	0.9326
AT1G19530			unknown protein		Lus10002540 [exp]	19.9	0.9406
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	22.4	0.9349
AT4G21920			unknown protein		Lus10001143 [exp]	23.1	0.9320

Compare expression of checked genes

Lus10043336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.