Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63110 595 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 509 / 5e-180 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G35600 423 / 6e-147 HDA7 histone deacetylase7 (.1) AT3G44680 420 / 2e-145 HDA09, HDA9 histone deacetylase 9 (.1) AT3G44490 113 / 9e-30 HDA17 histone deacetylase 17 (.1) AT3G18520 115 / 8e-28 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT1G08460 105 / 4e-25 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 95 / 8e-21 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 95 / 8e-21 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT4G33470 91 / 1e-19 HDA14, ATHDA14 histone deacetylase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019486 [exp] 767 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001605 [exp] 503 / 6e-173 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 476 / 2e-166 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020570 [exp] 434 / 7e-151 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 420 / 3e-144 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10024919 [exp] 110 / 5e-26 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 110 / 7e-26 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 107 / 7e-25 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10001850 [exp] 100 / 5e-23 AT1G08460 558 / 0.0 histone deacetylase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082500 [exp] 659 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 634 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.009G170700 [exp] 504 / 2e-177 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.004G209800 [exp] 503 / 9e-177 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.001G460000 [exp] 421 / 6e-146 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.012G060400 [exp] 100 / 1e-22 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.004G092900 [exp] 99 / 3e-22 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.009G020500 [exp] 92 / 2e-20 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 89 / 3e-19 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 66 / 1e-11 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10043337 pacid=23168209 polypeptide=Lus10043337 locus=Lus10043337.g ID=Lus10043337.BGIv1.0 annot-version=v1.0 ATGGAGATCAACCGCCCATTCCCCGCCGGCCCCAACGACGTCCGCAAATTCCACTCCGACGAATACGTCGACTTCCTCTCCACCATTACCCCTTCCGCTG TTTCAGACCCTCTCAACCATCGCCATCTCAAGAGGTTCAACGTCGGGGAGGACTGTCCTGTCTTCGACGGCATTTTCGGTTTCTGTCAGGCTTCTACCGG TGGCTCGATTGGGGCTGCCGTCAAGCTCAATCGAGGGGACGCTGACATCGCAATTAATTGGGCCGGCGGATTGCATCATGCGAAGAAGAGTGAAGCCTCA GGGTTTTGTTATGTGAATGATATTGTGCTTGGGATTCTGGAGATGCTCAAGGTTCACAAGCGTGTACTGTATGTGGACATTGACGTTCACCATGGAGATG GTGTTGAAGAAGCATTCTATACAACTGATAGGGTGATGACGGTGTCATTCCACAAATTCGGGGATTTCTTTCCAGGAACTGGGCACATTAGGGATGTTGG TGCTGGGCAAGGGAAGAACTATGCCCTGAACATCCCATTAAATGATGGACTGGATGATGAAAGTTTTAAGAGCCTGTTTCAGCCCATAATGCTCAAAGTT ATGGAGGTTTATCAGCCTGATGCTGTTGTTCTCCAATGTGGAGCAGATTCTTTGACGGGTGACAGGTTGGGTTGCTTCAACTTGTCCGTAAAGGGTCATG CTGAGTGCCTCCGTTTTCTTAGGTCCTTCAACGTTCCTATGATGGTTTTAGGCGGTGGTGGGTATACTATTCGCAATGTAGCTCGCTGTTGGTGTTACGA GACGGCAGTAGCAGTTGGAGTTGAACCTGATAACAAGTTACCTTACAATGAATATTATGAGTACTTTGGCCCTGATTATACACTTCATGTAGAGCCTTCG AATATAGAAAACCTAAACACGCCAAAAGACATCGAGAAAATTAGGAACATACTGCTGGAACAACTCTCTAGACTTCCTAATTCACCAAGCGTGCCTTTCC AGATGACACCATCCGTGACTGAAGTTCCAGAAGAGGATGAAGAGGAGATGGATGAAAGAGAAAGACCTAGACCTCGTATATGGGGTGGGGAAGAGTACGA CTCGGATCGTGAAGATGACAGCAAGCCTCACACTAGAAGTTTGAATACGGAGGATGAGTCTGTGCAGAATGATGAAACGAGGGATGGCACCGATGATATG GACGATGACAAACCAGAAGTCGATAGTCGATTTTGA
AA sequence Show only first row Show all	>Lus10043337 pacid=23168209 polypeptide=Lus10043337 locus=Lus10043337.g ID=Lus10043337.BGIv1.0 annot-version=v1.0 MEINRPFPAGPNDVRKFHSDEYVDFLSTITPSAVSDPLNHRHLKRFNVGEDCPVFDGIFGFCQASTGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEAS GFCYVNDIVLGILEMLKVHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAGQGKNYALNIPLNDGLDDESFKSLFQPIMLKV MEVYQPDAVVLQCGADSLTGDRLGCFNLSVKGHAECLRFLRSFNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPS NIENLNTPKDIEKIRNILLEQLSRLPNSPSVPFQMTPSVTEVPEEDEEEMDERERPRPRIWGGEEYDSDREDDSKPHTRSLNTEDESVQNDETRDGTDDM DDDKPEVDSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10043337 [exp]	0	1
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	10.1	0.7839
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	10.3	0.8443
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	11.1	0.8243
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	13.7	0.7704
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10009552 [exp]	14.9	0.7891
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	15.4	0.8420
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	17.3	0.8321
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	21.4	0.7742
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	22.4	0.7836
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	25.9	0.7858

Compare expression of checked genes

Lus10043337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.