Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47740 114 / 1e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G65500 60 / 3e-10 U-box domain-containing protein kinase family protein (.1) AT1G01680 59 / 4e-10 ATPUB54 plant U-box 54 (.1) AT5G57035 56 / 7e-09 U-box domain-containing protein kinase family protein (.1) AT1G16760 54 / 3e-08 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 52 / 2e-07 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G61550 52 / 2e-07 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 51 / 3e-07 U-box domain-containing protein kinase family protein (.1.2) AT1G78940 50 / 5e-07 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT4G25160 48 / 2e-06 U-box domain-containing protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019487 [exp] 343 / 2e-120 AT5G47740 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10002238 [exp] 111 / 4e-29 AT5G47740 183 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10029567 [exp] 110 / 6e-28 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10040825 [exp] 68 / 1e-12 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 66 / 3e-12 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10017145 [exp] 54 / 3e-08 AT5G35380 207 / 3e-60 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 52 / 1e-07 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027592 [exp] 48 / 2e-06 AT3G20200 175 / 2e-50 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 49 / 3e-06 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084700 [exp] 213 / 1e-69 AT5G47740 124 / 1e-34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G083100 [exp] 205 / 2e-66 AT5G47740 112 / 5e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G003900 [exp] 121 / 3e-33 AT5G47740 215 / 3e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.001G239100 [exp] 57 / 4e-09 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 56 / 1e-08 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 53 / 8e-08 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 51 / 3e-07 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 45 / 2e-05 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 42 / 0.0003 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10043338 pacid=23168177 polypeptide=Lus10043338 locus=Lus10043338.g ID=Lus10043338.BGIv1.0 annot-version=v1.0 ATGGAAATCGAAGGACAGTCGCCGGCGACGGGGAGCAGCAGCAGCAGCTCGTTCCAGTATAGTAAATCAAGGGTGATGTCGTCTGAAATTGTGGAGATCG TTGATTTCGATGACAACAATATCAACAACAACAGTAGTAGTGGGATAGTGATCAATGATGTATATGTTTGTGTGGGGAGAGATGACATGGATGCTGTCAA ATGGGCCGTCGATCATATCTCTTCCCCTCCCTCTCGTTTGTTCCTCGTCCACGTCTTCCCTCCCCTCCGCTACATCTCCACTCCAGTTGGAAGATTGGCG AAGAACCAGCTGAGCAAAGACCAGTTGAGGTTTTACTCCAACGAGGAGAACAACAGGAGGAGGAATCTGTTGCACAAATACATTCGCTTCTGTGATGATG CCAAGGTTCCAGTAGACACCATGTTGCTGGAGAGCGCCGAAACTGGGAAAGCCATACTTGATCTAATCCCTGTTCTCAACATCACCAATCTCGTCCTCGG CGCAAAGCCTCCTCCTCTTCCACGCTCCAGGTTGATCAAGAGAGTCGGGAAAGCAGAATTCGTCAAGAAGAACGCGCCCGATTACTGCCAGGTAACCGTG GTTCACAAAGGGAAGGCTTTAACTGATGGTGTTCACAGAAGAATGGCGTCATCATCATCCATTGCCAATCCTGATCAGAGGAAGTTCTTCTCCTGCGGTT GTTTCTCTGGAAAGTTTGATAATTGA
AA sequence Show only first row Show all	>Lus10043338 pacid=23168177 polypeptide=Lus10043338 locus=Lus10043338.g ID=Lus10043338.BGIv1.0 annot-version=v1.0 MEIEGQSPATGSSSSSSFQYSKSRVMSSEIVEIVDFDDNNINNNSSSGIVINDVYVCVGRDDMDAVKWAVDHISSPPSRLFLVHVFPPLRYISTPVGRLA KNQLSKDQLRFYSNEENNRRRNLLHKYIRFCDDAKVPVDTMLLESAETGKAILDLIPVLNITNLVLGAKPPPLPRSRLIKRVGKAEFVKKNAPDYCQVTV VHKGKALTDGVHRRMASSSSIANPDQRKFFSCGCFSGKFDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	0	1
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	1.0	0.8510
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	5.3	0.8056
					Lus10015658 [exp]	7.6	0.8319
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	7.9	0.8198
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	10.1	0.7976
AT5G44005			unknown protein		Lus10003608 [exp]	10.2	0.7967
AT1G62760			Plant invertase/pectin methyle...		Lus10028910 [exp]	11.5	0.7795
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10018467 [exp]	14.1	0.7244
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	14.4	0.7870
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	14.7	0.7826

Compare expression of checked genes

Lus10043338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.