Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48190 322 / 4e-96 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G50160 181 / 8e-49 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT1G01580 95 / 4e-20 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 91 / 5e-19 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT1G23020 91 / 5e-19 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23980 89 / 2e-18 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT5G49740 87 / 7e-18 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 87 / 2e-17 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G23990 85 / 4e-17 ATFRO5, FRO5 ferric reduction oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019489 [exp] 551 / 2e-175 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10019488 [exp] 233 / 2e-67 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10036379 [exp] 98 / 4e-21 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 91 / 1e-18 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10039268 [exp] 87 / 1e-17 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 85 / 5e-17 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10012161 [exp] 84 / 1e-16 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10014957 [exp] 72 / 6e-13 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10000064 [exp] 44 / 0.0001 AT3G48190 248 / 2e-76 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G076650 [exp] 373 / 6e-114 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.015G083200 [exp] 208 / 9e-59 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 199 / 1e-55 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.014G088000 [exp] 95 / 3e-20 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 91 / 9e-19 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 88 / 5e-18 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.017G142700 [exp] 85 / 4e-17 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079100 [exp] 85 / 5e-17 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.001G079000 [exp] 84 / 9e-17 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10043339 pacid=23168278 polypeptide=Lus10043339 locus=Lus10043339.g ID=Lus10043339.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTGAAACATCTAAGGCTTCGAAATGACTGGCGAATCGTTGATCTTGGATATGGCAGCAGCACCCAACCAAACGAAGAGCCTATGGCAACTA AGTACCTAAGAGTGGCGACCCGATTCGGGTTACTAGCAGAAGCATGTCTAGCGCTGCTTCTGCTACCTGTTCTGAGAGGGTTCGCCTTATTTCGGTTAAT CGGAATCCAGTTTGAGGCTTCAGTAAGGTATCACATCTGGCTTGGAACTGCAATGGTACTCTTTGCCACTGTACATGGAGTAAGCACCCTGTTCATCTGG GGTGTCAGCCACCATGTTCAACAAGAGGGGACACTTGTTGCAGCACTGGTGATGTGGATCACATCATTTCCCCAAATAAGGAGGAGAAGATTTGAAATCT TCTACTACACGCACCATCTTTACGTTGTGTTCTTCGTGTTCTTCCTGTTTCATGCTGGGGACAGGCATTTCTATGCTGTTTTGCCAGGTGTATTCCTCTT TGGCCTCGACAAGTTGCTCCGGATTATGCAGTCGAGGCCGCAAACTTGCATCCTCTCGGCACGTTTGTTCCCCAACAGAGCCATAGAGCTCATCCTGCCT AAAGATCCCACTGAAACATGGCCTTACCTGATTACATTGCTCCTCCAGTGCGTGTCGTTAGAAATATCATCAAGCAAAAAGCGTTTCCCAAAGTCGACGT ACGCAAAAACACTACGCATTGTCGTCCAGCGATCAGAAGATGTTAAATTCTCAGGCAAGATGCCAGTTCTGCTACCGGTGGTTAAAACCCTTTTTAATCA CCTTTGGGATGTACTAAGCAGTGTTCCAAGCTTTCAGGCAGAATATGGAATTATTCTTCGTCTTCTATTAAGCATTGGAGACTATAGGTTTCACTTGAGG AAAAAAATTTATTCTAGCCTGATCCATTTCTACATTGAGAGGGTGGAAACAACTTTAAGCGAGGAAAATGATAGCCACTCTGTTCCAAGGGAGGAGGTTT TCCGTTGCATTACGACTCTACATTCCCTTCTTGAGAATCCTCCAGGTGACTTGGCAAATGATGTTAGAGGGGATATTGCTAAAGGGTTGGTTCAGATGTT CTCCTCTGTAAGGTATTTCACCTGCAAATTTATCTGGGAGGAAAGCAAAATATCACGCAAGCTTATGGAATGTGTTAATGTGTATTTGTTGAACAATGGC CCTAACTTGAGCTGGGAATCCTTAGAGATTCATAGTGCTGTGCGCAATTTTGTATTCCGTTGTTGGCTTACTACACGAGATCATGGCCTCGAGATTACAG CTAAACTTAAAGTCGGGGTGATCTTGAAGGAAGTTCTTTGCTTGCAAGTAGTTTCTTATCCTGTTTATGATGTTGCTTATGAGCTTAGGACAGAAGCAAT GAAGGATGATAAATGTGAAGTCTTAAGTGGATCACAGTATTGCTTGGTGGAACTTTCAGCTCTGGTGTTATATCGGGCTTGTGTTAGTACAGTTAGAGCT CCAGTAGCTGAAAAGCGTGTAAAGAGGGAGCACATTTGTGTAATTGTAAAGGAAGCACTTGCAGGGGGGAAATGGTTATGGCTACCGCTGAAGGCCGGCA GGTTCCCTTCAGACTTACAAGAGATGTCATCGATGGAATGGGTGTTACAGGAGTTGAAGGTGTTTTCCGCAGATGTTGTGAAGAAAGCGCACGAATAA
AA sequence Show only first row Show all	>Lus10043339 pacid=23168278 polypeptide=Lus10043339 locus=Lus10043339.g ID=Lus10043339.BGIv1.0 annot-version=v1.0 MELLKHLRLRNDWRIVDLGYGSSTQPNEEPMATKYLRVATRFGLLAEACLALLLLPVLRGFALFRLIGIQFEASVRYHIWLGTAMVLFATVHGVSTLFIW GVSHHVQQEGTLVAALVMWITSFPQIRRRRFEIFYYTHHLYVVFFVFFLFHAGDRHFYAVLPGVFLFGLDKLLRIMQSRPQTCILSARLFPNRAIELILP KDPTETWPYLITLLLQCVSLEISSSKKRFPKSTYAKTLRIVVQRSEDVKFSGKMPVLLPVVKTLFNHLWDVLSSVPSFQAEYGIILRLLLSIGDYRFHLR KKIYSSLIHFYIERVETTLSEENDSHSVPREEVFRCITTLHSLLENPPGDLANDVRGDIAKGLVQMFSSVRYFTCKFIWEESKISRKLMECVNVYLLNNG PNLSWESLEIHSAVRNFVFRCWLTTRDHGLEITAKLKVGVILKEVLCLQVVSYPVYDVAYELRTEAMKDDKCEVLSGSQYCLVELSALVLYRACVSTVRA PVAEKRVKREHICVIVKEALAGGKWLWLPLKAGRFPSDLQEMSSMEWVLQELKVFSADVVKKAHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	0	1
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	1.7	0.8105
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	2.6	0.8166
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	5.3	0.8110
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	7.3	0.7695
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	7.7	0.7780
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	11.0	0.7697
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	13.0	0.7588
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	14.5	0.7516
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	16.3	0.7227
					Lus10029801 [exp]	18.0	0.7767

Compare expression of checked genes

Lus10043339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.