Plant FIBer expression Database

Lus10043340 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48190 136 / 1e-38 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000064
[exp]
202 / 2e-68 AT3G48190 248 / 2e-76 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Lus10019489
[exp]
183 / 6e-55 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G076650
[exp]
160 / 5e-47 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02260 FATC FATC domain
Representative CDS sequence
>Lus10043340 pacid=23168287 polypeptide=Lus10043340 locus=Lus10043340.g ID=Lus10043340.BGIv1.0 annot-version=v1.0
ATGTTTCAGGTGTTTATTCATGATCCTTTGTATAAATGGGCGTTGTCTCCTCTGAAAGCCTTACAACGGCAAAAGGATACGGATTATGATCTGGAGACGA
GTATGGAAGACTCCGATGATCGAAGCGAGGGGAACAAGGATGCGACGCGGGCGCTACTGCGAGTGAAGCAAAAGCTAGATGGCTACGAAGAAGGGGAGCT
GAGAAGTGTGAATGGACAGGTTCAGCAACTGATTCAAGACGCTATTGATTCGGAGCGTCTGTGCCAAATGTTTCCATTGAAGGAACTTTACTTGGACAAT
TACTAA
AA sequence
>Lus10043340 pacid=23168287 polypeptide=Lus10043340 locus=Lus10043340.g ID=Lus10043340.BGIv1.0 annot-version=v1.0
MFQVFIHDPLYKWALSPLKALQRQKDTDYDLETSMEDSDDRSEGNKDATRALLRVKQKLDGYEEGELRSVNGQVQQLIQDAIDSERLCQMFPLKELYLDN
Y

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48190 PIG1, ATATM, AT... pcd in male gametogenesis 1, A... Lus10043340
[exp]
0 1
AT3G48190 PIG1, ATATM, AT... pcd in male gametogenesis 1, A... Lus10000064
[exp]
1.0 0.9311
AT3G48240 Octicosapeptide/Phox/Bem1p fam... Lus10043341
[exp]
4.5 0.7741
AT4G36980 unknown protein Lus10019346
[exp]
4.7 0.7969
AT3G48190 PIG1, ATATM, AT... pcd in male gametogenesis 1, A... Lus10043339
[exp]
7.3 0.7695
AT5G44070 ATPCS1, ARA8, C... CADMIUM SENSITIVE 1, ARABIDOPS... Lus10003623
[exp]
7.7 0.7757
AT2G17820 AHK1, ATHK1 histidine kinase 1 (.1) Lus10028438
[exp]
8.5 0.7648
AT1G33360 ATP-dependent Clp protease (.1... Lus10040561
[exp]
11.0 0.7598
AT3G55530 SDIR1 SALT- AND DROUGHT-INDUCED RING... Lus10000513
[exp]
13.0 0.7671
AT3G26100 Regulator of chromosome conden... Lus10006455
[exp]
13.5 0.7555
AT3G20530 Protein kinase superfamily pro... Lus10040050
[exp]
15.9 0.7414

Lus10043340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.