Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48240 141 / 8e-43 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G63130 126 / 8e-37 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 117 / 3e-33 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT4G05150 99 / 2e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 91 / 4e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 91 / 4e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 91 / 4e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 90 / 5e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G01190 88 / 2e-20 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019490 [exp] 326 / 4e-115 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002938 [exp] 124 / 5e-36 AT3G48240 130 / 1e-38 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10026700 [exp] 118 / 1e-33 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10017947 [exp] 111 / 2e-31 AT5G63130 121 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10036862 [exp] 105 / 9e-29 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10006214 [exp] 104 / 2e-28 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10002588 [exp] 106 / 6e-27 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 99 / 2e-24 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 94 / 9e-24 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083400 [exp] 159 / 6e-50 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G085000 [exp] 158 / 1e-49 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 132 / 1e-38 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 124 / 2e-35 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.004G032200 [exp] 105 / 5e-27 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 103 / 5e-26 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 95 / 6e-23 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G006200 [exp] 93 / 8e-23 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 93 / 4e-22 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.009G080200 [exp] 92 / 5e-22 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10043341 pacid=23168079 polypeptide=Lus10043341 locus=Lus10043341.g ID=Lus10043341.BGIv1.0 annot-version=v1.0 ATGAAAACTACTCCCGCCGCAGCGTCCACCAACACTATTATTAAGTTCCTATGTAGCTACGGAGGGAAGATCGTTCCTCGTTCTAGCGACGGCAAGCTTC GTTACCGCGGCGGACTCACAAGAGTGTTTGCTGTCCATCGTTCCGTTTCTTTTTCCGAGCTGATGGTCAAGCTGGGGGAGTTCTGTGGTGCTCAGTCGTC CGTCGAATTGAAGTGTCAACTGCCTAACGGAGATTTGGAGACTTTGATCTCAATCAAGTCCGACGAGGAATTGGCCAACCTTTTCCAAGAATATGACCGT TGTTGCCCCGGATCCAAAATTAGAGCGGTCCTGTCCCTGCTCAAACCGGTGTCGTCATCTCCTACTCAATCGGAGACAGCAACGAGCAATGATTCCTCTC CTTGCAGTACCCCTGAATACTTCCGCCCATCGGCTTGCGGCTTTCACTCCCCGACGTTTGGTTACCGGGCCGGCTTCTATGGAGCTTCCGTCCAAAGCGG CCACTACAGCCCACAGCATCCAATCGGAATTGGACAGCAGCGGAAAGTGGTCGGGCGTCGCTACAGGATTTGGAACTAA
AA sequence Show only first row Show all	>Lus10043341 pacid=23168079 polypeptide=Lus10043341 locus=Lus10043341.g ID=Lus10043341.BGIv1.0 annot-version=v1.0 MKTTPAAASTNTIIKFLCSYGGKIVPRSSDGKLRYRGGLTRVFAVHRSVSFSELMVKLGEFCGAQSSVELKCQLPNGDLETLISIKSDEELANLFQEYDR CCPGSKIRAVLSLLKPVSSSPTQSETATSNDSSPCSTPEYFRPSACGFHSPTFGYRAGFYGASVQSGHYSPQHPIGIGQQRKVVGRRYRIWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	4.5	0.7741
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	5.8	0.7916
AT1G64300			Protein kinase family protein ...		Lus10041114 [exp]	7.1	0.7425
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	10.6	0.7775
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	14.9	0.7501
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	19.8	0.7899
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	22.4	0.7894
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	31.1	0.7611
AT5G43150			unknown protein		Lus10010543 [exp]	34.5	0.7594
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	39.5	0.7443

Compare expression of checked genes

Lus10043341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.