Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20360 704 / 0 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 486 / 5e-170 GTP binding Elongation factor Tu family protein (.1) AT1G07920 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1) AT1G07930 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2) AT1G07940 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2) AT5G60390 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2.3) AT5G10630 122 / 1e-29 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G18070 118 / 2e-28 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT2G31060 73 / 1e-13 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 65 / 8e-11 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017957 [exp] 720 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 709 / 0 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 689 / 0 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10027995 [exp] 479 / 3e-166 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 478 / 5e-165 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 150 / 5e-40 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 150 / 5e-40 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 149 / 8e-40 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10026488 [exp] 141 / 3e-37 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110200 [exp] 716 / 0 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.003G121600 [exp] 714 / 0 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.014G138100 [exp] 485 / 1e-169 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.002G215900 [exp] 484 / 3e-169 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.008G042500 [exp] 150 / 4e-40 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 150 / 4e-40 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 150 / 4e-40 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 150 / 5e-40 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 147 / 4e-39 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 147 / 4e-39 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10043342 pacid=23168151 polypeptide=Lus10043342 locus=Lus10043342.g ID=Lus10043342.BGIv1.0 annot-version=v1.0 ATGGCAATCTCCGCTTCTGCCGCCGCCTCTACTTCCTCCAGGTTCGCCGTCTACCCATCAGCTGCTGCCTCCTCCACCTCCTCCTCTTCCGGTAATACTG TCACCGTCCATTCCAAACCTACCAAATTGACCCTTCTCTCTTCCTCCTTCACCTCTCCTTTCCTCTCCAATTCCGCCTCCCCCCTCCGCCGCCGCCGCGG CGCTCCTTCCTCCTTCACAGTCAGAGCTGCTAAGGGCAAGTTCGAGCGTAACAAGCCCCATCTCAACATCGGCACAATTGGCCACGTCGACCACGGCAAG ACAACCCTAACCGCCGCCCTCACCATGGCCCTCGCCTCCATGGGGAACAGCGCTCCCAAGAAGTACGACGAAATCGACGCCGCCCCGGAAGAACGCGCCC GCGGTATCACAATCAACACCGCCACCGTCGAGTACGAAACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCTGACTACGTCAAGAACAT GATTACCGGAGCGGCACAGATGGACGGCGCAATCCTCGTCGTCTCCGGCGCCGATGGGCCCATGCCGCAGACCAAGGAGCACATCCTGCTGGCGAAGCAG GTCGGCGTCCCAAACATGGTGGTGTTCATGAACAAGCAGGACCAGGTGGACGACGAGGAGCTTCTTCAATTGGTGGAATTGGAGGTGCGTGAATTGTTAT CGTCTTACGAATTCCCTGGAGATGATATCCCGATTATATCCGGATCTGCTCTTTTGGCCTTGGAGGCCTTGATGGCCAATCCAGCCATCAAAAGAGGTGA GAATGAATGGGTTGACAAAATCTACGAGCTGATGGATAATGTTGATAGCTACATTCCAGTCCCGCAACGAATGGTGGATTTGCCTTTCTTGCTTGCTATT GAAGATGTGTTCTCAATTACTGGTCGTGGTACTGTTGCTACTGGTAGGGTTGAAAGAGGTACAATCAAGATTGGTGATACAGTCGACCTTGTTGGTTTGA GAGATACCAGGACGACTACCGTCACTGGAGTTGAGTTCTTCCATAAGATTTTGGACGAGGCTATGGCTGGTGACAATGTGGGGTTGTTGCTGAGAGGTTT CCAGAAGGCTGATATCCAGAGAGGGATGGTGTTGGCTAAACCAGGGACGATCACTCCCCATACCAAATTCGAAGCTGTTGTGTATGTTTTGAAGAAGGAT GAAGGAGGGAGGCATTCGCCGTTTTTCGCAGGGTACAGGCCGCAGTTCTACATGAGGACTACTGATGTGACTGGGAAAGTTACTCAGATTATGAACGATA AGGACGAGGAGTCGAAGATGGTTATGCCCGGGGATCGAGTGAAGATGGTGGTGGAGCTCATTATGCCTGTTGCTTGTGAGTCTGGGATGAGGTTTGCTAT CAGAGAAGGTGGCAAGACTGTAGGAGCTGGTGTCATTGGCAAGATCCTTGAGTAG
AA sequence Show only first row Show all	>Lus10043342 pacid=23168151 polypeptide=Lus10043342 locus=Lus10043342.g ID=Lus10043342.BGIv1.0 annot-version=v1.0 MAISASAAASTSSRFAVYPSAAASSTSSSSGNTVTVHSKPTKLTLLSSSFTSPFLSNSASPLRRRRGAPSSFTVRAAKGKFERNKPHLNIGTIGHVDHGK TTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ VGVPNMVVFMNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMANPAIKRGENEWVDKIYELMDNVDSYIPVPQRMVDLPFLLAI EDVFSITGRGTVATGRVERGTIKIGDTVDLVGLRDTRTTTVTGVEFFHKILDEAMAGDNVGLLLRGFQKADIQRGMVLAKPGTITPHTKFEAVVYVLKKD EGGRHSPFFAGYRPQFYMRTTDVTGKVTQIMNDKDEESKMVMPGDRVKMVVELIMPVACESGMRFAIREGGKTVGAGVIGKILE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	0	1
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	1.0	0.9746
AT3G15900			unknown protein		Lus10011486 [exp]	2.8	0.9351
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	3.5	0.9512
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	3.9	0.9338
AT5G42070			unknown protein		Lus10032408 [exp]	4.0	0.9308
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	4.2	0.9435
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	4.2	0.9336
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	7.0	0.9332
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	8.1	0.9267
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	8.5	0.9302

Compare expression of checked genes

Lus10043342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.