Plant FIBer expression Database

Lus10043344 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44660 686 / 0 ALG6, ALG8 glycosyltransferase family (.1)
AT5G38460 101 / 1e-22 ALG6, ALG8 glycosyltransferase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019495
[exp]
916 / 0 AT2G44660 717 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Lus10017594
[exp]
104 / 2e-23 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G053200
[exp]
717 / 0 AT2G44660 669 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Potri.017G114100
[exp]
94 / 2e-20 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Potri.004G100500
[exp]
94 / 3e-20 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03155 Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence
>Lus10043344 pacid=23167971 polypeptide=Lus10043344 locus=Lus10043344.g ID=Lus10043344.BGIv1.0 annot-version=v1.0
ATGGCAGCTGGAAAATCTCAAGTGGAAAGGCAGCCGATCATATGGCGAAAAAACCTCGTATGGTTCTTCGGTGTAGCAGCGTGCGTTAAACTCCTCCTGA
TCCCGTCATACCACAGTACTGACTTCGAAGTCCACCGTCACTGGTTGGCTTTGACCCGATCCCTTCCCATCTCTCAATGGTACTCTGATGAAACCAGCCC
TTGGACGCTAGATTATCCGCCTTTCTTCGCCTACTTTGAGTACATTCTCTCCTTCTTCGCTCGGCTCGTCGACCCTCGGATCGTCGACATTAACAAGGGC
ATCAACTATAAAGCCAACACCGTCGTCTATTTCCAGAGAATTACGGTAATCTTATCCGATCTGTGCCTTTTATACGGGGTATACCGATTGACCAGGAAGT
TGGAGGGTAAATCTAAGGTTTTGATGTGGACATTTGTGGTCTGGTCTCCGGCGCTTGTGATTGTCGACCATATACATTTTCAGTACAACGGGTTTTTGCT
TGGGCTGTTGATGCTGTCCATTTCTTATTTGCAAGATGGGAGCGATTTGATGGGGGGATTTCTCTTCGCAGTGTTGCTGTGTTTTAAGCACCTGTTTGCG
GTGGCTGGACCTGTTTATTTTGTTTACTTGTTGAGACATTATTGCCGCGGTGGATTGCTCAAGGGTGTTGGAAGGCTCTCCATCATGGGAGCTGTTGTGG
TGTCTGTTTTTGCAGCTGCATTTGGTCCATTTTTCTACCAGGGCCAGATTCAACAAGTGATCAGCCGAATGTTTCCTTTTGGCAGGGGACTTTGTCACGC
ATACTGGGCTCCGAATTTTTGGGTCTTCTACATTATATTAGATAAAGGCCTTGCTTTTCTGCTTAGAAGACTTGGGTTGGAAGTCCCAACACCAGCAGCT
TCATTCACGGGCGGGTTAGTTGGGGATTCATCTCCTTTTGCAGTATTACCACAGGTGACTCCCCTGACAACTTTCACCATGGTGCTACTGGCTATGTCTC
CTTGCCTTGTTAAGATATGGAAGAATCCTCAGCCAGGGTCGGTTGCCAGATGGATATCCTATGCTTATACCTGCGGGTTTCTATTCGGATGGCATGTACA
TGAGAAGGCATCACTCCATTTTGTCATACCTCTTGCTATTGTTGCAAACCAGAGCCTGGAGGATGCTAAGCATTACTTCTTGCTATCAATCGCAACGTGT
TACTCGTTATTTCCACTTCTATACGAGGCCCAGGAATATCCTATCAAAGCTGTGTTATTACTGCTGCATTGCATGCTGATGTGGTTTGGCTTCAGTGCCG
AATTTGGCAAGGCCAATGTAGCTAAGAAGTCAGCCATCTCAGATAAGACTTCCAGCACAAGCCAGAAAAAAGAAGAGGAAGAACGAGAATTCGTGATGGG
ACTAGGGGTGAAGTGTTATATTATGGGTATAGTAGCTATGGAGACATGGGGACAGTTGTTGCATCCTTACTTTCTGGGTGAAAAGCTTCCATTCATACCA
CTTCTGTCCATCTCCATCTATTGTGGGATTGTGGTAATGTACTCTTGGATGTGGCAGCTTAAACGGATAATGGTGTGA
AA sequence
>Lus10043344 pacid=23167971 polypeptide=Lus10043344 locus=Lus10043344.g ID=Lus10043344.BGIv1.0 annot-version=v1.0
MAAGKSQVERQPIIWRKNLVWFFGVAACVKLLLIPSYHSTDFEVHRHWLALTRSLPISQWYSDETSPWTLDYPPFFAYFEYILSFFARLVDPRIVDINKG
INYKANTVVYFQRITVILSDLCLLYGVYRLTRKLEGKSKVLMWTFVVWSPALVIVDHIHFQYNGFLLGLLMLSISYLQDGSDLMGGFLFAVLLCFKHLFA
VAGPVYFVYLLRHYCRGGLLKGVGRLSIMGAVVVSVFAAAFGPFFYQGQIQQVISRMFPFGRGLCHAYWAPNFWVFYIILDKGLAFLLRRLGLEVPTPAA
SFTGGLVGDSSPFAVLPQVTPLTTFTMVLLAMSPCLVKIWKNPQPGSVARWISYAYTCGFLFGWHVHEKASLHFVIPLAIVANQSLEDAKHYFLLSIATC
YSLFPLLYEAQEYPIKAVLLLLHCMLMWFGFSAEFGKANVAKKSAISDKTSSTSQKKEEEEREFVMGLGVKCYIMGIVAMETWGQLLHPYFLGEKLPFIP
LLSISIYCGIVVMYSWMWQLKRIMV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44660 ALG6, ALG8 glycosyltransferase... Lus10043344
[exp]
0 1
AT3G60050 Pentatricopeptide repeat (PPR)... Lus10038863
[exp]
5.9 0.9209
AT1G24360 NAD(P)-binding Rossmann-fold s... Lus10036980
[exp]
8.7 0.9152
AT2G44660 ALG6, ALG8 glycosyltransferase... Lus10019495
[exp]
11.4 0.9039
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Lus10008647
[exp]
15.0 0.9158
AT5G07350 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN ... Lus10043020
[exp]
19.8 0.9136
AT2G34590 Transketolase family protein (... Lus10023304
[exp]
21.9 0.9067
AT3G17465 RPL3P ribosomal protein L3 plastid (... Lus10017709
[exp]
29.0 0.9106
AT1G21480 Exostosin family protein (.1.2... Lus10028632
[exp]
31.6 0.8988
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10024616
[exp]
33.9 0.9105
AT1G51980 Insulinase (Peptidase family M... Lus10038262
[exp]
34.1 0.9087

Lus10043344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.