Plant FIBer expression Database

Lus10043345 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60210 107 / 6e-31 GroES-like family protein (.1)
AT2G44650 107 / 6e-31 CHL-CPN10 chloroplast chaperonin 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019497
[exp]
141 / 2e-44 AT2G44650 171 / 5e-56 chloroplast chaperonin 10 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G135700
[exp]
120 / 1e-36 AT3G60210 150 / 4e-48 GroES-like family protein (.1)
Potri.014G044300
[exp]
120 / 4e-36 AT3G60210 211 / 1e-71 GroES-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0296 GroES PF00166 Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence
>Lus10043345 pacid=23168321 polypeptide=Lus10043345 locus=Lus10043345.g ID=Lus10043345.BGIv1.0 annot-version=v1.0
ATGCCGCTGTTGATTTCCAGGTTGTGCCGCAAGCTGACAGAGTCCTCATCCGTCTTGAAGAGCTCCCCGAGTCCTGATTTTTTGCCATTTTGTACGAGAA
ATGAATTGAACTTGTTGGTGGTGCAGAAATCGGCAGGGGGAATCCTTTTACCTAAGTCAGCTGTTAAGTTCGAGCGATACCTTGTTGGGGAGGTGTTGTC
CGTTGGTGCAGAGGCTGAGCAGGTCGAGGCCGGCAAGAAGGTTCTTTTATCTGACATCCATGCTTACGAGGTGGATTTGGGAACAGATGGCCGGCATTGT
TTTGCCAGAGCTAGTGATTTGTTGGCTGTGGTTGAGTGA
AA sequence
>Lus10043345 pacid=23168321 polypeptide=Lus10043345 locus=Lus10043345.g ID=Lus10043345.BGIv1.0 annot-version=v1.0
MPLLISRLCRKLTESSSVLKSSPSPDFLPFCTRNELNLLVVQKSAGGILLPKSAVKFERYLVGEVLSVGAEAEQVEAGKKVLLSDIHAYEVDLGTDGRHC
FARASDLLAVVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44650 CHL-CPN10 chloroplast chaperonin 10 (.1) Lus10043345
[exp]
0 1
AT2G44650 CHL-CPN10 chloroplast chaperonin 10 (.1) Lus10019497
[exp]
1.0 0.8904
AT2G41475 Embryo-specific protein 3, (AT... Lus10043273
[exp]
1.7 0.8300
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10013607
[exp]
2.0 0.8373
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10021244
[exp]
2.8 0.8163
AT1G28150 unknown protein Lus10030561
[exp]
4.5 0.8160
AT2G37660 NAD(P)-binding Rossmann-fold s... Lus10024383
[exp]
7.3 0.7432
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10010111
[exp]
12.0 0.7656
AT1G67660 Restriction endonuclease, type... Lus10006437
[exp]
12.7 0.7889
AT3G24030 hydroxyethylthiazole kinase fa... Lus10023688
[exp]
16.4 0.7208
AT1G47720 OSB1 Organellar Single-stranded, Pr... Lus10024852
[exp]
17.5 0.7934

Lus10043345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.