Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46940 69 / 3e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46930 69 / 7e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46970 64 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46960 62 / 2e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46950 59 / 1e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G38610 60 / 2e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02250 48 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 47 / 9e-07 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT5G46980 40 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 39 / 0.0003 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019498 [exp] 263 / 4e-91 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10040119 [exp] 103 / 3e-27 AT5G46930 98 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10030926 [exp] 61 / 2e-12 AT5G46930 58 / 2e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 57 / 3e-10 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10008201 [exp] 55 / 1e-09 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10041650 [exp] 54 / 2e-09 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017345 [exp] 54 / 3e-09 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10020664 [exp] 50 / 5e-08 AT5G64620 67 / 2e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10001658 [exp] 49 / 2e-07 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044100 [exp] 145 / 7e-45 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086500 [exp] 102 / 1e-27 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 90 / 7e-23 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134900 [exp] 61 / 5e-12 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G102600 [exp] 59 / 4e-11 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.004G016500 [exp] 42 / 3e-05 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G109700 [exp] 39 / 0.0004 AT1G47960 46 / 2e-06 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10043346 pacid=23168231 polypeptide=Lus10043346 locus=Lus10043346.g ID=Lus10043346.BGIv1.0 annot-version=v1.0 ATGAAATCTGCCAACACCGATCCAAACATCTCCTACGACTTCTGCCTAACTCCCCTTCAAGCAGCCACCCATCCAGGATCCGACCCCGATCTCACCAAGC TAGCCGTCATCTCCATAAACTTGATCCACCACAATGCCACCAACACCAAGTGCTTCATCAACCACCTCCTCTCCGACCACGACAACGCTAATTCCATGAC AGACCCTTACGTCCAGGCATGCTTACAGGACTGCCTTCAGCTCTACTCCGACACCATACCTTCCCTCAAACCGGCCATCATAAGCATCAAGTACGGGAGC TTCATGGATGCCAACATCAAGGTGGGTTTGGTTCTCGATGCATCTGCAACTTGCGAAGACCAGTTTGTCAACAGACCGGAGGACTCCGTCTCCCCGCTAA CGACTAGAAACAGGGACAGATTTCAGCTGTGTGCAATCTCTCTATCCATCATCAACCTGCTCCGTATAGGCTGA
AA sequence Show only first row Show all	>Lus10043346 pacid=23168231 polypeptide=Lus10043346 locus=Lus10043346.g ID=Lus10043346.BGIv1.0 annot-version=v1.0 MKSANTDPNISYDFCLTPLQAATHPGSDPDLTKLAVISINLIHHNATNTKCFINHLLSDHDNANSMTDPYVQACLQDCLQLYSDTIPSLKPAIISIKYGS FMDANIKVGLVLDASATCEDQFVNRPEDSVSPLTTRNRDRFQLCAISLSIINLLRIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46940			Plant invertase/pectin methyle...		Lus10043346 [exp]	0	1
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	4.4	0.7698
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	13.6	0.7477
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	15.2	0.7261
					Lus10013984 [exp]	18.7	0.6786
					Lus10013687 [exp]	19.0	0.6911
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	19.8	0.7390
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	20.0	0.7468
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	22.0	0.7376
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	29.2	0.7281
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	31.7	0.6939

Compare expression of checked genes

Lus10043346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.