Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44640 446 / 5e-154 unknown protein AT3G06960 219 / 2e-65 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019499 [exp] 867 / 0 AT2G44640 451 / 5e-156 unknown protein Lus10022978 [exp] 246 / 1e-75 AT3G06960 530 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044200 [exp] 508 / 4e-178 AT2G44640 446 / 3e-154 unknown protein Potri.010G002800 [exp] 258 / 1e-80 AT3G06960 521 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12600 [flax] [poplar] DUF3769 Protein of unknown function (DUF3769)
Representative CDS sequence Show only first row Show all	>Lus10043347 pacid=23168109 polypeptide=Lus10043347 locus=Lus10043347.g ID=Lus10043347.BGIv1.0 annot-version=v1.0 ATGGCGAATCTCCGGACGGCAATGGATTCAGCATTCTGGGACCAGCCGGTTTCCTCTCCGGAAACCCTAGATGGCTGCGTGCGCTCAGTACCAAGCCAAG CATTCCCTCTGGAAATCTCTAGAGCTAGCCGAGCCCTCCGCATTCAACAGCTCTCCATCCTCAGTCGTGTTTTCCCGCTCGGAATTATCCCTTCCATTTC CCCAACTCCCCACGACCCCCAACTCGGCTCCCTCGCTTTCCAGTCCTCCTTCCTCAAGCTCTCCCTCTCCAATTGGTGGCTTGGACTGGTTGGCCAATTC CGCCCCAAGAAACTCATTTCATCCATCAAGCGAGATTTCTTCAATGGAGGCTCCCCTGAGTTCAAGAATGTGGGAAAGCATGTGTTGGACGAATCACTCT ACTCCATAGGTGCTTACACTCAATTCTCCCCAATTCCATCCACCTCCCTCTTGCTCTCTACTGAGCGCCATGGCGACAAGAAGACACCTCGCCACAAACT CATGCTCTACCACCAGCTTCGTAACCACGACATTACTTTAGAGGCAGCAGTGCCTGAGCTGTTTGTTGACAACCGTAAAGCTACTGGATACTGGGATGTT CCTCAGTCAGCATCCTTAGACGTGTCTTCCCTTCTCAACAAATCCGGTTTCGTGTACCGATTTGGCCTCCACGCAAATGCAGGTCATCCTGAATCTGCTG TTAATACAGTGGATGCCGAGCCACCCTCTGCTTTGGTGCCTGGACTATGTGGCAAGGTTGCCTGTTCTTACCAGAAGAGCAAGGATTTCTGGCGTATAAA GTGTTCCAAGAGTGCTGAGACGCGCTTGTCCCTGCCGCGTCCCTATGATGATCAACTAAAGGAACCTCATTCTTCTCTCTCTGGAATCATTGGTGCAACC TGCGCAGCCTGGTTAATTGGCGAGGAACGCTTAGCCACACCCTTTGCTCCCAAACCGCGAAGAAGAAGGAATAGGAACATTCCAGTTCCAGTTCCAATTC CAGTAAGGAGTAGTATAAAGAGGAGCCCAGTAAGTGCAGATATGTTCGGCTCAGTTTGCTATACCATCCAACATGGGAAGTTCACCAAGAGCTACGGTGA CTTGACAAGGCTGGATGCTCGCCTGGATATTTTCTCAGCAGCAGCTCTCTTCTCCAAAGGGGTTTTCAATACGTTTCAAAATTCAGAAGGGAATCCAGAC AATACACTATCTTCTCCCAGGCTCAACTTTATCTTCCAACAGCAGGTTGCGGGGCCCGTAGTGGCTCGAGTGGATTCAAGGTTTGCAGTGGGTGGTTCAT CGAGAGGGGCGCACCTGGAAGATGTGGTATACAGTATGAATTATTCATTGAAGGCAATGAGGGCTGCGAAAGTTGTAGCTTGGTATTCACCCAAAAGAAA AGAGGGAATGGTCGAACTACGCGTCTCTGAGTTCTAG
AA sequence Show only first row Show all	>Lus10043347 pacid=23168109 polypeptide=Lus10043347 locus=Lus10043347.g ID=Lus10043347.BGIv1.0 annot-version=v1.0 MANLRTAMDSAFWDQPVSSPETLDGCVRSVPSQAFPLEISRASRALRIQQLSILSRVFPLGIIPSISPTPHDPQLGSLAFQSSFLKLSLSNWWLGLVGQF RPKKLISSIKRDFFNGGSPEFKNVGKHVLDESLYSIGAYTQFSPIPSTSLLLSTERHGDKKTPRHKLMLYHQLRNHDITLEAAVPELFVDNRKATGYWDV PQSASLDVSSLLNKSGFVYRFGLHANAGHPESAVNTVDAEPPSALVPGLCGKVACSYQKSKDFWRIKCSKSAETRLSLPRPYDDQLKEPHSSLSGIIGAT CAAWLIGEERLATPFAPKPRRRRNRNIPVPVPIPVRSSIKRSPVSADMFGSVCYTIQHGKFTKSYGDLTRLDARLDIFSAAALFSKGVFNTFQNSEGNPD NTLSSPRLNFIFQQQVAGPVVARVDSRFAVGGSSRGAHLEDVVYSMNYSLKAMRAAKVVAWYSPKRKEGMVELRVSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44640			unknown protein		Lus10043347 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	1.0	0.9450
AT2G44640			unknown protein		Lus10019499 [exp]	1.4	0.9347
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	2.6	0.9136
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	3.5	0.9202
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	3.5	0.9188
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	5.2	0.9054
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	5.7	0.9043
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	6.3	0.9119
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	6.3	0.8972
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	7.3	0.9152

Compare expression of checked genes

Lus10043347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.