Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44600 133 / 1e-36 unknown protein AT3G60200 112 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019505 [exp] 408 / 3e-144 AT2G44600 160 / 6e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135400 [exp] 172 / 2e-51 AT2G44600 168 / 1e-49 unknown protein Potri.014G043800 [exp] 166 / 3e-49 AT3G60200 91 / 7e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043351 pacid=23168147 polypeptide=Lus10043351 locus=Lus10043351.g ID=Lus10043351.BGIv1.0 annot-version=v1.0 ATGAAGTGTAAGCAGCACCCCTGCGATCCCAGCAGCAGCATCGGTGTCTGCGCCTCCTGCCTCCGCTATCGACTCTCTGCTCTCGTCGCCGCTCAGTCCC AACTCCACCACCAATCTTCTTCTTCTTCTCCTTGGCTCCCTCGATCTCATTCTCGTCTAGTTTCTTCACAACCGCCGTGCAAATCTGAATCCCGCAATCA TCCGCCTCTCCTCTTCCCTCGCTCCGTCTCCCCCTACGTCGCCCGTCGCAAATCACACGGCGACGAGGACGGCGACGGCGACGGAATCGACGACTCCTGG TCCCACCACCACCTGCGGTTCCTGACTACTCCCCAGCTAGGTCCTACCTACTCAACCTCGATGGCCTCAACTTGCCAAAGGAAGTACGCCAAGCTATCTC TATTGGCCAATTTTTTCAGGTCCAGATCCGACAAACTGCGGAATCCAGATCTCGTCCCCGCGTCTTCCGCTCGGGATTCAGTTCAGCCGTCCTCTTCTTC CTGGTTCTCTTCTATCTTCGACAGTCGGCGGAAGAATAAGCATCAATCCGTCCCCGAATCCCTCCCTCGTCGGAGACGAGGCCGCGGAATGTCTCCAGCG GACTTCGAGGAATGCGATCCTACTGAAATCTGCGATGATCCATGGGAGTCGAAGAGAACGCCGGCGTCAGCGGCGAGGCGGGGGAAGACGAGGAATATGA ATAACAACGGAAACAATAATCCGGCGGCGGGCTTTGCATTCTGTTTGAGTCCTCTTGTTCGAGCCAGCCCCAACCCCCACTGGAACCAGAAAGGAACTCT GCCGCCTGACTTGGGAGAGGTCCGGGTGGCGGTGAAGCCGAACCTATCCACTGCGGCGTCGTTTTGCGCAAACCGATCGAGGAAGCTTGCCGACTTCGGC AGGCGGTGA
AA sequence Show only first row Show all	>Lus10043351 pacid=23168147 polypeptide=Lus10043351 locus=Lus10043351.g ID=Lus10043351.BGIv1.0 annot-version=v1.0 MKCKQHPCDPSSSIGVCASCLRYRLSALVAAQSQLHHQSSSSSPWLPRSHSRLVSSQPPCKSESRNHPPLLFPRSVSPYVARRKSHGDEDGDGDGIDDSW SHHHLRFLTTPQLGPTYSTSMASTCQRKYAKLSLLANFFRSRSDKLRNPDLVPASSARDSVQPSSSSWFSSIFDSRRKNKHQSVPESLPRRRRGRGMSPA DFEECDPTEICDDPWESKRTPASAARRGKTRNMNNNGNNNPAAGFAFCLSPLVRASPNPHWNQKGTLPPDLGEVRVAVKPNLSTAASFCANRSRKLADFG RR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44600			unknown protein		Lus10043351 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	3.6	0.8228
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	4.2	0.7729
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	9.2	0.7624
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	11.2	0.7827
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	12.0	0.7728
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10021913 [exp]	16.3	0.7333
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	17.0	0.7341
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	18.0	0.7204
AT1G11440			unknown protein		Lus10007616 [exp]	19.2	0.7434
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	22.5	0.7341

Compare expression of checked genes

Lus10043351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.