Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14830 99 / 7e-25 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 96 / 8e-24 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 89 / 2e-21 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 85 / 9e-20 ADL1B DYNAMIN-like 1B (.1) AT5G42080 77 / 4e-17 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019170 [exp] 110 / 2e-28 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 108 / 4e-28 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 93 / 2e-22 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10023073 [exp] 79 / 2e-17 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 77 / 6e-17 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10030255 [exp] 77 / 8e-17 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 69 / 3e-14 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 69 / 4e-14 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10019506 [exp] 0 / 1 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135100 [exp] 115 / 1e-30 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 114 / 4e-30 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 108 / 7e-28 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.014G043600 [exp] 98 / 3e-24 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 83 / 4e-19 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 76 / 9e-17 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 76 / 1e-16 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10043352 pacid=23168267 polypeptide=Lus10043352 locus=Lus10043352.g ID=Lus10043352.BGIv1.0 annot-version=v1.0 ATGTTCACTGCTTCAGATGGAGGGTATCTTTTTGTGCTTAATTCAGATTTTGTCTTGGAGAACGTTCACTTTGTTCTGAAAGAGCGAGTCCGGAAGTCGA TTGGTAAGCGTTTTCCGACAATGCAAGCTGCATTGGCTGGTGCAGCTAATCTGGAGAGGTTCCGGGATGACAAGAAAGCAGCAGCAGGACCAGGCAATCC GGTGGTGACCCCAGCCGTTGACCGTTACAATGAGAGCCATTTCAGGAGGATCGGGTCCAATGTCTCATCTTGTGTGAGGATGGTTTCGGAGACGCTGAAG AACACTGTCCCCAAGGCAATCGTGTATTGCCAAGTGAAGGAAGCTAAGCAGTCACACGCTGAAGAACACTGTCCCCAAGGAGCTGTCAGAATTGTTGGAT GGAAAGAAGGCAGCAGTGTGCAAAGAGGTTGGAGTTGTACAAGGCCGCAAGGGATGAGATAG
AA sequence Show only first row Show all	>Lus10043352 pacid=23168267 polypeptide=Lus10043352 locus=Lus10043352.g ID=Lus10043352.BGIv1.0 annot-version=v1.0 MFTASDGGYLFVLNSDFVLENVHFVLKERVRKSIGKRFPTMQAALAGAANLERFRDDKKAAAGPGNPVVTPAVDRYNESHFRRIGSNVSSCVRMVSETLK NTVPKAIVYCQVKEAKQSHAEEHCPQGAVRIVGWKEGSSVQRGWSCTRPQGMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	0	1
					Lus10039496 [exp]	3.6	0.9618
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10039184 [exp]	3.9	0.9174
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	5.1	0.9009
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	5.7	0.9302
					Lus10009927 [exp]	5.7	0.9540
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	5.9	0.9439
					Lus10018837 [exp]	6.7	0.9488
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	7.3	0.9370
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	7.3	0.9440
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	8.1	0.9448

Compare expression of checked genes

Lus10043352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.