Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20885 111 / 6e-31 RING/U-box superfamily protein (.1) AT3G43430 108 / 6e-30 RING/U-box superfamily protein (.1) AT5G41400 65 / 3e-13 RING/U-box superfamily protein (.1) AT3G61460 65 / 3e-13 BRH1 brassinosteroid-responsive RING-H2 (.1) AT4G00305 63 / 6e-13 RING/U-box superfamily protein (.1) AT3G60220 61 / 4e-11 ATL4 TOXICOS EN LEVADURA 4 (.1) AT1G63840 59 / 6e-11 RING/U-box superfamily protein (.1) AT2G42360 59 / 1e-10 RING/U-box superfamily protein (.1) AT2G42350 58 / 2e-10 RING/U-box superfamily protein (.1) AT2G47560 58 / 2e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019507 [exp] 215 / 1e-71 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1) Lus10017510 [exp] 70 / 6e-15 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 68 / 3e-14 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 68 / 3e-14 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 67 / 7e-14 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 62 / 9e-12 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10021197 [exp] 62 / 2e-11 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10008283 [exp] 60 / 3e-11 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10019973 [exp] 57 / 1e-09 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217000 [exp] 144 / 9e-44 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.018G046900 [exp] 124 / 4e-36 AT5G20885 136 / 4e-41 RING/U-box superfamily protein (.1) Potri.014G087700 [exp] 64 / 7e-13 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.001G101000 [exp] 64 / 1e-12 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 61 / 1e-11 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.002G161900 [exp] 61 / 1e-11 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 59 / 5e-11 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.007G086100 [exp] 56 / 9e-10 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.002G140600 [exp] 57 / 1e-09 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.019G091400 [exp] 56 / 1e-09 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10043353 pacid=23168319 polypeptide=Lus10043353 locus=Lus10043353.g ID=Lus10043353.BGIv1.0 annot-version=v1.0 ATGGGCTTCTTCGCTGAAGATTCAGGCCTAATCGTCACACATATCCTCTACAAGGCAGCTCTCGTCCTCGCACTTGTCAGATGCGCTCTCTCCTGGGCTC TCAAATTATGGAATCACACCCTCATACCACCACCACTGCCACCGTCGTCGTCGTCTCACCACCGCCGAGGCCGCCACCACTTACCGTCCCCTCAGCAGAT CAGAGATCGACTCATCCTCACCACTTTCGGCGACGTCGCGGAGAGGAGGAGGACGACGCAACAAGTTCCTGACTCCCAAAACGACGACGCCGTGGCCACG TGTGCCGTGTGCTTGAACCAGATGAAGGAAGAGGACGAGGTTAGGGAGCTGAGGAATTGCTGCCACGTGTTCCACAAGGACTGTATTGACAGGTGGATCG ATCACGAGCTTGACGATCAGGAAGAGGATGATGAGAGTAACCGTCGGACTTGTCCGCTCTGCAGGACGCCTTTGCTGACTGCGTCGCAGAGCTTAGCGTG GGCTGCAGCTGCAGCAGAGCAGCAACAGCCGAGCTGGGCGGTGGAGAGGATTCTGTACTTGTTTGGGGATGATCTGGCGCTGAGGTCATAA
AA sequence Show only first row Show all	>Lus10043353 pacid=23168319 polypeptide=Lus10043353 locus=Lus10043353.g ID=Lus10043353.BGIv1.0 annot-version=v1.0 MGFFAEDSGLIVTHILYKAALVLALVRCALSWALKLWNHTLIPPPLPPSSSSHHRRGRHHLPSPQQIRDRLILTTFGDVAERRRTTQQVPDSQNDDAVAT CAVCLNQMKEEDEVRELRNCCHVFHKDCIDRWIDHELDDQEEDDESNRRTCPLCRTPLLTASQSLAWAAAAAEQQQPSWAVERILYLFGDDLALRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20885			RING/U-box superfamily protein...		Lus10043353 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10015513 [exp]	4.2	0.8822
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	6.6	0.8956
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10027423 [exp]	15.2	0.8941
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	26.8	0.8929
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	27.3	0.8746
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	32.0	0.8884
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	35.5	0.8582
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	39.7	0.8480
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	40.2	0.8796
AT5G32440			Ubiquitin system component Cue...		Lus10027700 [exp]	42.4	0.8674

Compare expression of checked genes

Lus10043353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.