Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80770 541 / 0 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G43540 397 / 2e-130 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2) AT1G50920 114 / 6e-26 Nucleolar GTP-binding protein (.1) AT5G47860 111 / 8e-26 Protein of unknown function (DUF1350) (.1) AT1G10300 112 / 3e-25 Nucleolar GTP-binding protein (.1) AT1G07615 52 / 1e-06 GTP-binding protein Obg/CgtA (.1) AT5G18570 50 / 7e-06 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT4G39520 43 / 0.0007 GTP-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019508 [exp] 674 / 0 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007959 [exp] 122 / 3e-30 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 125 / 3e-29 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10002558 [exp] 124 / 4e-29 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 117 / 1e-26 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10009920 [exp] 107 / 2e-24 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10042222 [exp] 102 / 2e-22 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10008591 [exp] 100 / 4e-22 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1) Lus10024193 [exp] 99 / 2e-21 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134900 [exp] 586 / 0 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G217700 [exp] 452 / 4e-151 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2) Potri.001G258900 [exp] 120 / 5e-28 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 120 / 7e-28 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G072400 [exp] 112 / 6e-26 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.003G158400 [exp] 107 / 2e-24 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.001G239600 [exp] 52 / 2e-06 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.002G029600 [exp] 51 / 4e-06 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 50 / 9e-06 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.007G080900 [exp] 44 / 0.0006 AT4G39520 647 / 0.0 GTP-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07082 [flax] [poplar] DUF1350 Protein of unknown function (DUF1350) CL0023 [flax] [poplar] P-loop_NTPase PF02421 [flax] [poplar] FeoB_N Ferrous iron transport protein B CL0023 [flax] [poplar] P-loop_NTPase PF06858 [flax] [poplar] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Lus10043354 pacid=23168097 polypeptide=Lus10043354 locus=Lus10043354.g ID=Lus10043354.BGIv1.0 annot-version=v1.0 ATGGCCACCTCCGTCGTCAGTTGTATCCGTCCTTGGAAGGTGTTGTTTTGCCGTTCATGGATGCTTCCTCAGAGAACTCGCACAGCTCAACTAATTGCTC CCACGGCGATGCTTCCCGATGGCTACTCAAGCAGTATCGCCAGCTCCAGCAGCAGCTCCCGATTGAGAACCAAAATAACCGCCAACAATAACAACAGCAG CAACCGGAAGAAGAAGCTATTGTGGACAAGTATGGATTCTTGTTTGGTGATGATTCCTCCCCTCCTTCGAGGTAGAAAACCGCGCGGGATCATCAAATTC TTGGGCGGTGCGTTCATCGGAGCTTTGCCTGAATTTACCTATGGCTATCTCATCGAGCAATTGGCGAAGGAAGGCTATCTTGTTATCTCCGTGCCCTACA ATGTCACTTTCGACCACGCTTCAGCTGCTAATCAAGTTTACGAAAGATTCAATTCTTGCTTGGATTCCTTACTGGAAAATGGACTCCCTGATTCCAACCT CACTGCTGCCGACCTCAAAGCCCTTCCACTTTTCTCCGTTGGTCACAGGCCTGCTACAGAAGCAGTACCATACTTTGAGCAGTTCGGGCCACTTGTTAAT CAGATGATGCCAGTTGTGGAAGCATCTCCTGTATATTCGATGGCTATGACTGCGTCAGGAGATGCTTGGAATACGCTACTAGATATGGCTGAAGCTATAA TACCAGAAAACAACGAAGAAACTTTGGTTGCCCTCACAAAGTTTGTTGATCAGTTGCCTTCGGTGATGAATCAGGTTACTGAAGGGATATCCGAGTTCAA GCCAACTCCTGCAGAAAATCGTGATTGTTTCAAGAACTTGTATAATGTCCAGCACACATTACTGGTGAAGTTCAGTTCCGACACAATTGACGAGACAGAT CTCCTTGAGGAAGCCTTGAAGCCTCGCGTTGAGACCATGGGTGGCACAATAGAGAAGGTCCAATTAAGTGGCAACCATCTCACTCCATGTATACAGGCAC CAAGTTGGGAAGTGGGTAATGTGTATACTCCTGCAGATGCCGTTGCTCAAGGGCTAATAAGTCTTTCACTGAGTGATACCAGAGCTCTTTCAAGAACCAT CAGCAACTGGCTTGTTAAACCGTCCTTGGGCATTGATACAGTTGGGGCATTCCAAAAGCTTCCCATGGTAATGCCGGCAGTTGATATACTTGCCTCTGCA GTGCGAAAAGCTAGGAGAGTCCAACCAACCAAAGGCATAGCTAACATTGCCAAGAGGGAGAGAAATAGAGGTGCAAAACGGCTTGATGCATTGATGAAAG AATTGGCAGCTCCTTTGAAGGAATATGTTGGAAACTTTCCCAAGAGAAAATATTTGCATCCTTATGAAAGGTCCCTCGTGGAATTGACCCTTGGCGATGG AGTTTATGAAGAGGTTCTGCGAAACGTGGATGCTTTAAGGAAAAAGGTGGTTGTTGTGGGAAAAGAGCATGCTTCTCTCTGCGCTCAGACACAGACGAAA CGGGAAGCTGAGGAACGTTTGAAAGAGGGTCTGGAAAAGATTGAAGATGTTTTCACATCGGATGGCAAAGTAGTTGATGACTTATTAAATATTGCTAAGA CACTACGAGCTATGCCAGTGGTCGATTTGGAAACACCAACTCTCTGTCTAGTTGGAGCACCCAATGTGGGAAAATCATCTTTGGTTCGCACACTTTCAAC TGGGAAGCCTGAGGTCTGCAACTACCCTTTCACAACTAGAGGAATTTTGATGGGGCATATTGCGTTAAACTTTCAGCATTTTCAGGTAACAGACACACCT GGTCTATTAAAGAGATCTGACGACGACAGGAACAATTTGGAGAAGTTGACTCTTGCGGTCCTCTCACATCTGCCAACAGCCGTATTATATGTTCACGATC TTACTGGGGAATGTGGGATCTCACCCTCCAATCAGTTTGTGATATACAAGGAAATTAAGGAGAGGTTCAGAGATCATCTTTGGCTGGACGTTGTTTCCAA GTGTGATTTGTTGCAAGGATCTCCTGTACTCTACATCACTGATGATGTTGATGACGGTGATGCTACTGATCCTGAAATGGAAAATTACCGAGAAGCGGGA CCTGTTGGAGCAATCCATGTATCAGTAAAAACTGAAGAAGGATTGAATGAGCTAAAACAGAGGGTACATGATCTTCTGCTTGCTCAGAGGGGCAACATCA GCTGTCAGGAAGTGAAGGAAGAAACCTCAACTCGAGTCTATGCCTACTCCATTGTTGGCTTTATACAGCAAACCTGGGAGGCCACCAATATCAGTGGCAA TCCTCAGCTTTTCGGAAACACCATATTGACACTGTATATCAACATAATTGGTCCCGAAAAAATCCGAACTTTATATGAAAAAATGTATCGTTGGCTGGAT GACGTAGCTGTAGTGCGACGTCCGTTGATGCTACGCGAAGTGGCAAGTCAACTTAATCCTTCCTCGACGTCAGGCTTTTACAGATTTGTATTCTGGAGGG GAAGTCTACCGTCGACCAACACTTCGCCGTCCGTTCCATTCTTCAGTCTTACGGTTCCTGCGAGTGATAATTTGTTAGAAATATCAGATTTTGACAAATT GGGTCAGATTTTAGCATTGGGCCTCAACAAAGCGGGAAATCGCTCGAAGAAAAAGCGGGAAACCTCCTCCTTCCATCGACACCCGCCGACTGGTTTTTCA GACTGGAACGGAGGACCTAGCTTTGTTGCTCTTGCTCTTCCTTTTTCTGTCCCCTACCGCGGCCTTTTGTAG
AA sequence Show only first row Show all	>Lus10043354 pacid=23168097 polypeptide=Lus10043354 locus=Lus10043354.g ID=Lus10043354.BGIv1.0 annot-version=v1.0 MATSVVSCIRPWKVLFCRSWMLPQRTRTAQLIAPTAMLPDGYSSSIASSSSSSRLRTKITANNNNSSNRKKKLLWTSMDSCLVMIPPLLRGRKPRGIIKF LGGAFIGALPEFTYGYLIEQLAKEGYLVISVPYNVTFDHASAANQVYERFNSCLDSLLENGLPDSNLTAADLKALPLFSVGHRPATEAVPYFEQFGPLVN QMMPVVEASPVYSMAMTASGDAWNTLLDMAEAIIPENNEETLVALTKFVDQLPSVMNQVTEGISEFKPTPAENRDCFKNLYNVQHTLLVKFSSDTIDETD LLEEALKPRVETMGGTIEKVQLSGNHLTPCIQAPSWEVGNVYTPADAVAQGLISLSLSDTRALSRTISNWLVKPSLGIDTVGAFQKLPMVMPAVDILASA VRKARRVQPTKGIANIAKRERNRGAKRLDALMKELAAPLKEYVGNFPKRKYLHPYERSLVELTLGDGVYEEVLRNVDALRKKVVVVGKEHASLCAQTQTK REAEERLKEGLEKIEDVFTSDGKVVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRTLSTGKPEVCNYPFTTRGILMGHIALNFQHFQVTDTP GLLKRSDDDRNNLEKLTLAVLSHLPTAVLYVHDLTGECGISPSNQFVIYKEIKERFRDHLWLDVVSKCDLLQGSPVLYITDDVDDGDATDPEMENYREAG PVGAIHVSVKTEEGLNELKQRVHDLLLAQRGNISCQEVKEETSTRVYAYSIVGFIQQTWEATNISGNPQLFGNTILTLYINIIGPEKIRTLYEKMYRWLD DVAVVRRPLMLREVASQLNPSSTSGFYRFVFWRGSLPSTNTSPSVPFFSLTVPASDNLLEISDFDKLGQILALGLNKAGNRSKKKRETSSFHRHPPTGFS DWNGGPSFVALALPFSVPYRGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	0	1
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	2.8	0.8819
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	3.5	0.8786
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	6.9	0.8349
					Lus10026804 [exp]	12.4	0.7288
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	14.0	0.8672
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	17.1	0.7489
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	18.4	0.8388
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	19.2	0.7645
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	20.0	0.7802
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	24.7	0.8373

Compare expression of checked genes

Lus10043354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.