Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44580 452 / 5e-159 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019511 [exp] 714 / 0 AT2G44580 456 / 2e-160 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346900 [exp] 516 / 0 AT2G44580 463 / 3e-163 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09724 [flax] [poplar] Dcc1 Sister chromatid cohesion protein Dcc1
Representative CDS sequence Show only first row Show all	>Lus10043355 pacid=23168142 polypeptide=Lus10043355 locus=Lus10043355.g ID=Lus10043355.BGIv1.0 annot-version=v1.0 ATGTCTTGTCACACAGGTGCTGAAGCTGTTCTAAATCTGCAACCAAAATCTTCCTTATCTGTTTCCTATGACACTCTCTTCGGATCTGGTGGCAATCTTA TGCTCCTTGAGCTACATGATAATATGCTTCCTGACCTCCTTCACCAGAGGGTAACGTTAAGAGGCGAGCCAGATGAAGACACGGTTCTATGCACTCAGTC AAAAACATACGCTGTCAAATTCGTTGGAACTTCTAATTCAGTATTTCTTATACCCCCGTCAGCTCATGGCCAGAAACCTGTTGCATCTGTTGTTGAAATA TCTGCTGGTACTATGGAGCTCGTCGAGATTGCTCCCAAGCTAGACATGCTTAAAACTCTTCTCCTGCAGAAGCCTTACAGTTCAATGGATGAATTACAGG CTGACAATATGGAGGAGGATGATATAAAGGAAAATGAAACCGGATTGTACAGATGGGGCGATCTGGTAAACAAGATTCAAGCGAGTGATGAGGAATTGAG GAGTGGATTACAGGCTCTCTCGGCTGTGGAGATTGATGGTTATTGGAGAATTGTAGATGAGAAGTATATGGATACCGTTCTGACGATGCTGTTGCATAAT TCTGTTTTGAACGACTGGTCGCTCGATGCACTCCTTGAAGATGAAGTCGTGAATTTTCTGGTAAGTGATGGATTCCCGCGAAGGCTAGTGTACCATTGTT TAGATGTTTATGGAAGTAAGGTCGATAGGCTTGAAGGCGAAAGCAGCGTGTGGAGGCTGGACGAAAGACGAGTGTGTGTGCATTTTGCAAGGCAGGTGTT GGGAGCTGGAAAGATGAAATTGGAGAGCTTTATGGATAAGTGGTCGAAGAAGATCCCTGATGGGATGCATTTGAGTTTGGATATGTTGGAAGGTGAAGTC CTGAGTGAAAAAGTCGGAATAGAGACGTGGATTCGTGGTTTCAGAGTAACGAATCTGCCTTCGAACCCTGCTGAGCGTTTTGGGATCCTTTTCAGAGAAC GCCCCAAATGGGAGTGGAAGGATTTGCAGCCTTACATCAGAGATTTGAAAGTACCGGGTCTATCTTCAGAAGGGTTGCTGCTAAAGTACACAAGAAGGAC ACAAGCTACGCAGGATGCAGAACCTGTTTTTTCTGCAAGATAA
AA sequence Show only first row Show all	>Lus10043355 pacid=23168142 polypeptide=Lus10043355 locus=Lus10043355.g ID=Lus10043355.BGIv1.0 annot-version=v1.0 MSCHTGAEAVLNLQPKSSLSVSYDTLFGSGGNLMLLELHDNMLPDLLHQRVTLRGEPDEDTVLCTQSKTYAVKFVGTSNSVFLIPPSAHGQKPVASVVEI SAGTMELVEIAPKLDMLKTLLLQKPYSSMDELQADNMEEDDIKENETGLYRWGDLVNKIQASDEELRSGLQALSAVEIDGYWRIVDEKYMDTVLTMLLHN SVLNDWSLDALLEDEVVNFLVSDGFPRRLVYHCLDVYGSKVDRLEGESSVWRLDERRVCVHFARQVLGAGKMKLESFMDKWSKKIPDGMHLSLDMLEGEV LSEKVGIETWIRGFRVTNLPSNPAERFGILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQATQDAEPVFSAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44580			zinc ion binding (.1)		Lus10043355 [exp]	0	1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	45.0	0.7553
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	51.9	0.7695
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	56.1	0.7729
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	67.3	0.7620
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	92.3	0.7073
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	94.4	0.7295
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	120.0	0.7245
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	126.2	0.7149
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	139.7	0.7454
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	145.8	0.7283

Compare expression of checked genes

Lus10043355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.