Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 600 / 0 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 598 / 0 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT4G19230 205 / 3e-60 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 203 / 1e-59 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 200 / 2e-58 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G05690 189 / 2e-54 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G29090 189 / 4e-54 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G36380 188 / 2e-53 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 173 / 3e-48 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G50660 172 / 1e-47 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019513 [exp] 716 / 0 AT1G05160 540 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036670 [exp] 261 / 2e-81 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033105 [exp] 253 / 4e-78 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 234 / 3e-71 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10034768 [exp] 204 / 7e-60 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10042652 [exp] 204 / 2e-59 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 202 / 3e-59 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 198 / 2e-57 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 192 / 3e-55 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179100 [exp] 623 / 0 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 604 / 0 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G071300 [exp] 250 / 3e-77 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.004G235400 [exp] 201 / 1e-58 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 199 / 1e-57 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.014G029100 [exp] 198 / 1e-57 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 195 / 2e-56 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 195 / 2e-56 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G242600 [exp] 195 / 3e-56 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 194 / 5e-56 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043357 pacid=23168022 polypeptide=Lus10043357 locus=Lus10043357.g ID=Lus10043357.BGIv1.0 annot-version=v1.0 ATGGTGAGCTTGAAATGGACGTTGAAGAGAGTGAACGTGTGGTGGTACGAGTCGGAGCTTCCGGATGAAGAAATCCGGCAGCGGCTTCCTCCAGGGGATT ACGGCTGGCCGATCATCGGGAACATGTGGTCTTTCCTCTCGGCTTTCAAGTCCGACGACCCTGACTCCTTCCTCCGTTCTTTCACTTCCAGGTACGGAGG GCGAGGGGTGTACAAGGCGTTGATGTTCGGACGACCCAGTGTGTTCGTAACAACCCCTGAAACATGCCGCCGAGTACTAAACGACGACGATTCCTTCAAG CCCGGCTGGCCCACTTCCACCGTGGAACTCATGGGCAAGAACTCCTTCCTCGCCATCACCCCGGAAGAGCACAAGCGCCTCCGCCGACTGACAGCCGCTC CGGTCAACGGCCACGAGGCCCTCTCCCTCTACATGGGCTTCATCGGGGAGAGCGTTTCCGCAGCACTCGAGGAATGGTCTTCGTCTCCAGAACCCTTGGA GTTTCTCACTCACCTCCGCAAACTCACTTTCAGAATCATTATGTTTATCTTCATGGGAACCGAGAGCGAGGACGTCATGGAAATCCTTGAGAGGGAGTAC ACCGCCCTCAACCATGGCGTCCGCGCCATGGCTATCAACCTCCCTGGTTTCGCTTACAACAAAGCCCTCAAGGCTCGTAAGAAGGTGGTGGCTGTGTTGC AATCAATCCTAGATGAGCGCAGAAGTAGAATGAAACTGGAGAAGGGTGAGACTGGCAACAAAGAAGAGGAAAAGACTAAGAAGAAGAAGAAGAAAAGGGA CATGATGGATGAATTGATGCGAGTGGAAGACGAAAATGGTGGGAAACTACGAGATGAAGAGATCATAGACATTCTGCTAATGTACTTGAATGCTGGACAT GAATCCTCTGCTCATGTCACCATGTGGGCTACTCTTTTACTTCAGCAGCACCCTCATTGTCTTAAAAAAGCCAGAGAGGAGCAAGAGGAAGTAGTGAAAC GAAGGCCTGCAGATCAAAAAGACATACTGACCTTCAAGGAAATTCGCCAGATGGATTATCTTAACAAGGTGATCGACGAGACAATGCGATATGTAACATT CTCACTCACTGTGTTCAGAGAAGCCAAAACCAATGTGGATATGGACGGTTATGTGATTCCAAAGGGTTGGAGGGTGCTGGTGTGGTTCAGGGCCGTTCAT TTCGAGGCTGACGTATATCCAAAACCAAGAGAGTTTGACCCGTCCAGATGGGATAATTATACAGGAAAGGCGGGTAGTTTCCTTCCCTTTGGAGCAGGAA GTTATATGTGCCCTGGGAATGATCTAGCCAAGCTTGAGATTGCAGCTTTCTTGCACTATTTCCTGCTCAATTATGAGCTCGAAAGAGTGAATCCAGAATG CCCGACCCAGCACCTGCCTCACCCTCGACCAAAAGACAACTGCTTGGGTTGGATTAAGAAGAAGAAGAAGCAGCATGCTCCCCCATCAACCGTCTAA
AA sequence Show only first row Show all	>Lus10043357 pacid=23168022 polypeptide=Lus10043357 locus=Lus10043357.g ID=Lus10043357.BGIv1.0 annot-version=v1.0 MVSLKWTLKRVNVWWYESELPDEEIRQRLPPGDYGWPIIGNMWSFLSAFKSDDPDSFLRSFTSRYGGRGVYKALMFGRPSVFVTTPETCRRVLNDDDSFK PGWPTSTVELMGKNSFLAITPEEHKRLRRLTAAPVNGHEALSLYMGFIGESVSAALEEWSSSPEPLEFLTHLRKLTFRIIMFIFMGTESEDVMEILEREY TALNHGVRAMAINLPGFAYNKALKARKKVVAVLQSILDERRSRMKLEKGETGNKEEEKTKKKKKKRDMMDELMRVEDENGGKLRDEEIIDILLMYLNAGH ESSAHVTMWATLLLQQHPHCLKKAREEQEEVVKRRPADQKDILTFKEIRQMDYLNKVIDETMRYVTFSLTVFREAKTNVDMDGYVIPKGWRVLVWFRAVH FEADVYPKPREFDPSRWDNYTGKAGSFLPFGAGSYMCPGNDLAKLEIAAFLHYFLLNYELERVNPECPTQHLPHPRPKDNCLGWIKKKKKQHAPPSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10043357 [exp]	0	1
AT1G19230			Riboflavin synthase-like super...		Lus10033423 [exp]	1.4	0.8850
AT3G01380			transferases;sulfuric ester hy...		Lus10039444 [exp]	27.7	0.7993
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	27.8	0.8212
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	33.6	0.7464
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	38.0	0.8192
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	38.3	0.8203
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	39.7	0.7568
AT2G41150			unknown protein		Lus10018111 [exp]	41.2	0.7402
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	55.5	0.7963
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	57.3	0.7674

Compare expression of checked genes

Lus10043357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.