Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44520 492 / 2e-173 COX10 cytochrome c oxidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019514 [exp] 739 / 0 AT2G44520 458 / 7e-152 cytochrome c oxidase 10 (.1) Lus10033224 [exp] 47 / 3e-05 AT4G23660 456 / 3e-160 polyprenyltransferase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216100 [exp] 523 / 0 AT2G44520 488 / 2e-171 cytochrome c oxidase 10 (.1) Potri.005G093600 [exp] 50 / 2e-06 AT4G23660 413 / 2e-143 polyprenyltransferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10043358 pacid=23168362 polypeptide=Lus10043358 locus=Lus10043358.g ID=Lus10043358.BGIv1.0 annot-version=v1.0 ATGTGGAGAAACTCCTCTAAGTTTTTCCGGAACACCGGCGTATTATCGCCTTCCTCAGTTTACGCCCATAGCAGCTACCGTTCCGTACCCAACTCCGTTT TCCGGTCACCGTCCGTTCCAGCTGCTCTCGCCTCTCAATCCCCTTCAGATCCTTCAAGATTAGGGTTTCTCCCCGCCAGATCAGATGCGATCCGACCTCT ATCTTCGGTTGCTTCCAACCCAGCCGCCGCAATTGCTACCTTGCCGCATGGAGTTGAATTGGCTCGTCATTACGGCCGCTGCTTTTGGGAGCTCTCCAAA GCTCGTCTCAGTATGCTGGTTGTTGCTACATCTGGAACCGGATATGTTCTAGGTAGCGGAAGTGTTATAGACTTGGCGGGACTTTGTTGGACATGTACTG GTACCATGATGGTTGCAGCTTCTGCTAACTCATTGAATCAGGTCTTTGAGGTTAGTAATGATGCCAAGATGAAAAGAACAAGATTGAGGCCACTTCCTTC AGGGCGCATGACAGTTCCCCAGGCTGTGGCTTTTGCATCTGCTGTTGGCTTAGCTGGCACTTCTTTATTAGCATGCAAGGCTAATATGATGGCAACAGGG CTTGCAGCGTCCACCCTGGTCCTATATGCATTTGTTTACACACCATTGAAGCAGATCCACCCTGTCAACACATGGGTTGGAGCTGTTGTTGGTGCCATTC CGCCACTTTTAGGGTGGGCTGCTGCTTCTGGCCAGATTTCTCTCAATGCAATGATTCTTCCTGCTGCTCTCTACTTTTGGCAAATACCCCATTTTATGGC ACTTGCATATATGTTACGGAATGACTATGCTGCGGGAGGGTACAAGATGCTCTCCCTTGCTGACACTAGTGGCCGCAGAACTGCCTTGGTAGCCTTGAGA AATTGCATTTATCTGGTACCCTTGGGGTTTCTCGCTTATGATTGGGGTATGGCTTCTGGGTGGTTTTGTGTCGAATCAACGATCCTGACCCTTGCAATCG GCGCCTCAGCCTTTTCATTTTACCGGGAGCCAACGATTGAGAAAGCAAAGAGGATGTTTTATGCCAGCCTACTCTACCTGCCGATATTTATGACGGGGAT CCTCGTACACCGAAACACAGAGACGTCGACAACTGAGCTATCGGATCCAGTGCGGACACAGTTGGTAGAAGAGAGAAAGAGTAGGAAGCAGAGGAAAAAG GAAGTGGGTGCGAAAGCAGTACGTCCACCAGTGGCGTATGCCTCGGTTGCACCTTTCCCTTTCCTACCAGCGCCTTCATACGCACCTTCTTAG
AA sequence Show only first row Show all	>Lus10043358 pacid=23168362 polypeptide=Lus10043358 locus=Lus10043358.g ID=Lus10043358.BGIv1.0 annot-version=v1.0 MWRNSSKFFRNTGVLSPSSVYAHSSYRSVPNSVFRSPSVPAALASQSPSDPSRLGFLPARSDAIRPLSSVASNPAAAIATLPHGVELARHYGRCFWELSK ARLSMLVVATSGTGYVLGSGSVIDLAGLCWTCTGTMMVAASANSLNQVFEVSNDAKMKRTRLRPLPSGRMTVPQAVAFASAVGLAGTSLLACKANMMATG LAASTLVLYAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASGQISLNAMILPAALYFWQIPHFMALAYMLRNDYAAGGYKMLSLADTSGRRTALVALR NCIYLVPLGFLAYDWGMASGWFCVESTILTLAIGASAFSFYREPTIEKAKRMFYASLLYLPIFMTGILVHRNTETSTTELSDPVRTQLVEERKSRKQRKK EVGAKAVRPPVAYASVAPFPFLPAPSYAPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	0	1
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	3.3	0.8242
AT3G11760			unknown protein		Lus10029364 [exp]	4.0	0.7163
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	6.8	0.7927
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	8.9	0.7776
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	10.5	0.7886
AT2G37035			unknown protein		Lus10013807 [exp]	11.0	0.7335
AT3G03210			unknown protein		Lus10020802 [exp]	13.0	0.7152
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	15.5	0.7032
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	18.3	0.7264
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	19.4	0.7339

Compare expression of checked genes

Lus10043358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.