Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21630 1036 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 952 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT3G23660 947 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 916 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 588 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 122 / 3e-28 Sec23/Sec24 protein transport family protein (.1) AT2G27460 62 / 1e-09 sec23/sec24 transport family protein (.1) AT3G07100 49 / 2e-05 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019516 [exp] 1455 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 950 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 946 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 583 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 496 / 7e-167 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 452 / 1e-149 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 328 / 3e-106 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 130 / 9e-31 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 125 / 2e-29 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178500 [exp] 1306 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.001G307400 [exp] 945 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 937 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.002G238500 [exp] 898 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 499 / 3e-166 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 491 / 3e-163 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 131 / 2e-31 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 129 / 8e-31 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.004G201800 [exp] 64 / 3e-10 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 56 / 7e-08 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10043359 pacid=23168426 polypeptide=Lus10043359 locus=Lus10043359.g ID=Lus10043359.BGIv1.0 annot-version=v1.0 ATGGCGGAATTCCTGGAGCTGGAAACTCAGGACGGCGTACGGATGCCATGGAATGTGGTTCCGGGGACGAAGCAAGAAGCGAGCAACTGCGTCGTCCCGA TCTCCGCGATATACACGCCGATCAAGTCCTTCCCCAACATGCCCGTCCTCCCTTACGGTCCTCTCCGGTGCCGGACGTGCCGTTCTGTTCTTAACCCTTT CTCGAATGTCGATTTCGCGGCAAAGATCTGGATCTGCCCTTTCTGTCACCAGCGCAATCACTTCCCTCCGCAGTATGCATCCATCAGCGACGAGAACCTC CCAGCGGAGCTCTTCTCGCAGTACACGACGATCGAGTACGAGTCTCCAGGTGACAATTTGTCGTCCTCCTCCTCTGTATTCATATTCGTCATCGACACTT GTATCATTGAGGAGGAGATGGCTTTCCTTAAGTCGGCCTTGTCCCAGGCCATCGAGCTTCTTCCTGAGAATTCCCTCGTCGGCTTGATCACTTTCGGGAC CTTTGTTCACGTTCATGAGCTTGGATTTGGCCAGCTCCCAAAGACCTACGTCTTCCAAGGCTCTAAAGACGTAACCAAGGAACAGCTGCTGGACAAGATG AGCTTTTTCCTCAAGAAACCCAAACCTACAACGGGTGTAATTGCCGGTTCCAGAGACGGCCTCTCTTCCGAGAGCATTTCCCGCTTTCTTTTGCCCGCCT CCGATTGCGGCTTCACGCTTAATTCGGTTCTAGAGGAGTTGCAGAAAGATCCATGGCCTGTACCAGCTGATCAGAGGGCTACTAGATGCACCAGCACTGC TCTCAGTGTAGCTGCATGTTTGTTGGGAGCTTGTGTTCCTGGTTCTGGTGCTAGAATAATGGCGTTCGTGGGTGGTCCATCCACTGAGGGTCTGGGTGCT ATTGTATCAAAGAATCTTTCTGAGCCTATTCGATCTCACAAAGACTTGGATAAAGATTCTGCACCATATTATCACAAAGCCGTTAGGTTCTATGAGGGAT TAGCGAAGCAGCTAGTTCATCAAGGTCATGTACTGGATCTATTTGCTTGTGCCCTTGATCAGGTAGGAGTTGCTGAGCTCAAAGTTGCAGTGGAAAGAAC TGGTGGCCTTGTTGTGCTTGCAGAAAGCTTTGGCCATTCAGTATTCAAGGACTCTCTTAGACGTGTTTTTCAATCAGGCGACCATGACCTTGGACTCTCA TCAAATGGAATCTTTGAAATTAACTGCTCAAAGGATATTAAAGTTCAAGGTATCATAGGCCCTTGTGCATCTCTTGGGAAGAAAGGTCATTTATCCTCCG ACACTGTCATCGGTCAAGGAAATACCAGTGCATGGAAGATGTGTAGCCTAGACAAGTCTACATCTTTGTGTCTAATATTTGACATTGTTAAGAAAGATAG CCCAGAACTTGCAGTTCAACCCTCAAGCAATCAGTTTTATTTCCAATTTTTAACTTATTACCAGCATAGCAGTGGTCAAATGAGGCTTCATGCTACAACC CTCTCAAGGAGATGGGTCACCGGAGCTGGAAGTTTACCGGACTTGATTGCTGGTTTTGACCAAGAAGCAGCAGCTGTCACCATGGCTCGATTGGTGTCCT TCAAGATGGAAGTTGAGGCTGAGTTTGACCCTATAAGATGGCTAGATAAAGCTCTAATCAATCTTTGTTCTCGATTTGGAGATTATCAGAAAGATAGCCC ATCATCTTTCAGTCTATCTCCACGGCTCTCAATATTTCCTCAGTTTATGTTTCATTTACGGCGTTCTCAGTTTGTCCAGGTGTTCAACAATAGTCCTGAT GAGACTGCATACTTTCGGATGATATTGAACAGAGAGAATGTAGCCAATTCAATCGTGATGATACAGCCTTCACTGATCTCTTACTCATTTCATTCGGCAC CAGAACCTGCTCTTTTGGATGTGGCAGCTATTGCAGCCGATAGAATCCTTCTTTTGGACTCTTACTTTACCGTGGTTGTTTTCCATGGGGCAACTATTGC TCAGTGGCGCAAAGCTGGGTACCATCATCAACAAGAACACCAGGCATTCGCGCAGTTGCTACAAGCACCTACTGATGATGCAGATAGCATAATAAAGGAA AGGTTTCCAGTTCCTCGCTTAGTAGTGTGTGATCAGCACGGTTCACAGGCACGATTTCTGCTTGCGAAACTGAATCCGTCTGCAACGTATAATACAGATG CTCCTGTTCCCGGGGGAGACATTTTGTTTACGGATGATGTGAGCTTTGAGGTCTTCTTGGATCATCTCCAGAGACTAACCGTTCAATGA
AA sequence Show only first row Show all	>Lus10043359 pacid=23168426 polypeptide=Lus10043359 locus=Lus10043359.g ID=Lus10043359.BGIv1.0 annot-version=v1.0 MAEFLELETQDGVRMPWNVVPGTKQEASNCVVPISAIYTPIKSFPNMPVLPYGPLRCRTCRSVLNPFSNVDFAAKIWICPFCHQRNHFPPQYASISDENL PAELFSQYTTIEYESPGDNLSSSSSVFIFVIDTCIIEEEMAFLKSALSQAIELLPENSLVGLITFGTFVHVHELGFGQLPKTYVFQGSKDVTKEQLLDKM SFFLKKPKPTTGVIAGSRDGLSSESISRFLLPASDCGFTLNSVLEELQKDPWPVPADQRATRCTSTALSVAACLLGACVPGSGARIMAFVGGPSTEGLGA IVSKNLSEPIRSHKDLDKDSAPYYHKAVRFYEGLAKQLVHQGHVLDLFACALDQVGVAELKVAVERTGGLVVLAESFGHSVFKDSLRRVFQSGDHDLGLS SNGIFEINCSKDIKVQGIIGPCASLGKKGHLSSDTVIGQGNTSAWKMCSLDKSTSLCLIFDIVKKDSPELAVQPSSNQFYFQFLTYYQHSSGQMRLHATT LSRRWVTGAGSLPDLIAGFDQEAAAVTMARLVSFKMEVEAEFDPIRWLDKALINLCSRFGDYQKDSPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPD ETAYFRMILNRENVANSIVMIQPSLISYSFHSAPEPALLDVAAIAADRILLLDSYFTVVVFHGATIAQWRKAGYHHQQEHQAFAQLLQAPTDDADSIIKE RFPVPRLVVCDQHGSQARFLLAKLNPSATYNTDAPVPGGDILFTDDVSFEVFLDHLQRLTVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	0	1
AT3G15160			unknown protein		Lus10040027 [exp]	1.4	0.9029
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	1.7	0.9042
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	8.2	0.8947
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	8.7	0.8942
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	9.9	0.9018
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	10.5	0.8652
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	12.2	0.8515
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	12.4	0.8625
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	13.0	0.8633
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	13.6	0.8783

Compare expression of checked genes

Lus10043359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.