Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44830 542 / 0 Lecithin:cholesterol acyltransferase family protein (.1) AT5G13640 488 / 3e-168 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019519 [exp] 772 / 0 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10015639 [exp] 496 / 5e-171 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 486 / 1e-166 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 481 / 4e-165 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 481 / 5e-165 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190100 [exp] 574 / 0 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Potri.003G063100 [exp] 518 / 4e-180 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 501 / 1e-173 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.009G150800 [exp] 228 / 7e-74 AT3G44830 204 / 9e-63 Lecithin:cholesterol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10043360 pacid=23168240 polypeptide=Lus10043360 locus=Lus10043360.g ID=Lus10043360.BGIv1.0 annot-version=v1.0 ATGGGTGGCGTCTATTTCCTCCATTTCCTTAAATGGGTCGAAACTCCGACACCCATCGGCGGCGGCGGCGGTCCAGACTGGTGTTCCAAGCACATCAAGG CTGTTATGAACATCGGCCCTGCCTTCCTCGGCGTCCCCAAGACCGTCAGCAACTTCTTCTCTGCAGAGGCCAAGGACGTAGCTTTGATCAGAGCTATGGA TCCTGGATTATTGGACTCTGAGATGCTTGGACTTCAGACGCTGGAGCATGTGTTGAAGGTGAGTAGAACTTGGGATTCAGTTGTTTCTTTGCTTCCTAAA GGAGGAGAGGCTATCTGGGGTGATCTGGACTGGTCTCCTGAAGATAACAACTATGCTTCATGTGGTGATTTGTCGAAGCGCAAGGCCTTGCAATCTCCGG ATGACCAGAACTCCACTAGTGGTGGTGATGCAACTACATTCCTTCTTAAAGAACCGATTAAGTTTGGAAGGTTGATCTCCTTTGGCAAGGCTGCATCGGA ATTACCATCGTCGTTGCTGTCATCCCTCGATCAGAAGGATCTAATACTTTCAGAGACTAAGAACAATGCAACCTTGTCATGCAAGGACATCAAGACTGAA TATGATGAGATGAACAGAGAAAGCATTCCAAAGATTGCGGAGAACAAAGCATACACGGCAACAACAGTTCTTGATCTCCTGAGGGTTGTGGCTCCAAAGA CAATGAAACGAGCTGAAGCGCATTTCTCTCACGGCATAGCTGATAACCTCGACGATCCCAAATATACACATTACAAGTACTGGTCCAACCCACTCGAGAC AAAATTACCCGATGCACCAGATATGGAGATCTACTGCTTATATGGGGTAGGAATTCCCACAGAGAGATCATACGTCTACAAGATGTCTCCGAACACCAGG TGTAATAGCATTCCATTTCGGATCGACAGCTCTGTGGATGGAGATGATGGTGATAGTTGTTTGAGAGGTGGAGTGTATCATGTCGATGGCGATGAGAGTG TGCCAGTGTTAAGTGCAGGATTCATGTGTGCTAAAGGGTGGAAAGGACGAACAAGATTCAACCCGTCCGGGATCTCGAGTTATGTGAGGGAGTACCAGCA CAAGCCCCCGGCTAGCCTACTTGAAGGCCGGGGTGCCGAGAGTGGGGCACATGTTGACATAATGGGTAATGTTGGTTTGATAGAAGATGTTATGAGAGTT GCAGCTGGCGCCACTGGTTCTGAGATCGGTGGGGACCGTATTCATTCCGACATTCTAAGAATGTCGGACCGGATTAACATCCCACTGTGA
AA sequence Show only first row Show all	>Lus10043360 pacid=23168240 polypeptide=Lus10043360 locus=Lus10043360.g ID=Lus10043360.BGIv1.0 annot-version=v1.0 MGGVYFLHFLKWVETPTPIGGGGGPDWCSKHIKAVMNIGPAFLGVPKTVSNFFSAEAKDVALIRAMDPGLLDSEMLGLQTLEHVLKVSRTWDSVVSLLPK GGEAIWGDLDWSPEDNNYASCGDLSKRKALQSPDDQNSTSGGDATTFLLKEPIKFGRLISFGKAASELPSSLLSSLDQKDLILSETKNNATLSCKDIKTE YDEMNRESIPKIAENKAYTATTVLDLLRVVAPKTMKRAEAHFSHGIADNLDDPKYTHYKYWSNPLETKLPDAPDMEIYCLYGVGIPTERSYVYKMSPNTR CNSIPFRIDSSVDGDDGDSCLRGGVYHVDGDESVPVLSAGFMCAKGWKGRTRFNPSGISSYVREYQHKPPASLLEGRGAESGAHVDIMGNVGLIEDVMRV AAGATGSEIGGDRIHSDILRMSDRINIPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	3.2	0.9393
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	4.2	0.9303
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	4.5	0.9382
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	6.3	0.9279
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	7.0	0.9190
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	9.9	0.8874
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	10.2	0.9233
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	11.5	0.9213
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	11.7	0.9188
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	13.5	0.8570

Compare expression of checked genes

Lus10043360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.