Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 365 / 3e-121 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 363 / 2e-120 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 355 / 2e-117 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26320 350 / 2e-115 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G31500 349 / 3e-115 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT5G57260 343 / 4e-113 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13110 334 / 2e-109 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26280 327 / 1e-106 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26210 326 / 3e-106 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26290 325 / 5e-106 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024518 [exp] 752 / 0 AT3G26310 363 / 3e-120 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) Lus10002661 [exp] 445 / 5e-153 AT3G26300 323 / 2e-105 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 430 / 1e-146 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10042815 [exp] 427 / 4e-145 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10012767 [exp] 420 / 1e-142 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 419 / 2e-142 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10029035 [exp] 417 / 2e-141 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10013194 [exp] 416 / 7e-141 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10009903 [exp] 415 / 8e-141 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130850 [exp] 460 / 1e-158 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 459 / 3e-158 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 435 / 1e-148 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 434 / 2e-148 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 429 / 3e-146 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 428 / 6e-146 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 421 / 6e-143 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 401 / 2e-135 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 390 / 2e-131 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.012G090000 [exp] 380 / 5e-127 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043362 pacid=23168213 polypeptide=Lus10043362 locus=Lus10043362.g ID=Lus10043362.BGIv1.0 annot-version=v1.0 ATGGAAGAAGTAGCTACCATCCTGTTAGTCACAATCCTCACAGCTATCCCTATCATTCTCTTCCTGCAGAAACTTGTACAGAAGAGAATCAGAACACCAC CGGGGCCATGGAAGTTGCCAATCATTGGGAATCTCCACCAGATGGTATCTGGGAATCTCCTACCCCACCGCCGCCTAAGGGACTTGGCAACCATATACGG TCCCCTGATGCACCTTCAGTTTGGTGAAGTCTCGACCGTCGTCGTTTCGTCTGCAGAATTAGCCAGAGAGTTCCTCCAAACGAAAGACATCAACTTCGCC AGGAGGCCGTATGTGCCCTCTGCCCACACCATATTCTACGAAGGACGAGATATTCTTTTCGGAAATGGCGAGCACTGGAAGCATATGAGGAAGATTTGCC TTCACGAACTACTGGGCGCCAAGCGGGTTAAGTCACTCGTGCCGACGATTGAACAAGAGGTTAATGAACTTGTTACGTCTATCCTGCAGAAACCACGCTC TTCGTCATCAGGCATAAACATTGGTAGAATGCTTGTCTCTCTCGGGATTTCGCTCATTTCGCGTACCGCATTTGGGAAGATGAAGAAACATTCCGAATCT TTTTCTCCGGTTGGGCGAGAGATCTTCAGGGCGGTTGAAGGGTCAAGCCTCTGGGACTTATTCCCCTCTAGTTACTTAGTTCGTCTGCTTACGGGTACAG AGTCTAAACTGAAGAAGCTGCACAAAGAGGCCGATGCCATTCTCCAGACAATAATCGACGACCATATAGCAAAAAGAGCTGCGAATACGAATAGTATTGT TCATGATGAAGATCTGGTTGATGTGCTTTTGAACCAAGAGCTCGAAATTCCTCTCACCAACAATGACATCAAAGCTGTCTTACTGGACATGTTTCTTGGC GGGGGTGACACTGCTTCCGCCACGATTGAGTGGGCACTCTCAGAACTGATGATAAACTCTCAAGTTATGCAAAAAGTACAGAAAGAGGTGAGAGATCGAT TTGATGGAAAAGGAAAAATTGACGACTACGGGGATCTTGATCAACTCAAATATCTGAAACTAGTTATCAAGGAAACCTTGAGGTTACATCCTCCTGCTCC TTTACTTGTTCCTAGAGAAGCTCGTGAAGCAACGGTGATTCATGGTTATCTGATACCAGCTGAAACAAGGATCACGATTAACGCATGGGCTATAGCTCGT GATCGTCATGATTGGGGCGAACCTGAAAAGTTTAATCCGGAAAGATTCATCAATGATCTCTCCTCCAGTACTACTGATTACTCCAAGGGATTGGATTTTT CAATGATCCCGTTTGGTTCCGGAAGAAGAATTTGCCCGGCAGTGCATTATGGGATGGCTCTTGTAACTATTTGTCTAGCAAATTTGCTATATCATTTTGA TTGGCAGCTCCCACCCGGCATCACATCCGAAAATCTTGACATGTCCGAAGATTTTGGGATCGCGGTGAAGAAAAAACAAGACTTGTTCCTCATACCCATC CCATACCATCCTAAAGCGATATAA
AA sequence Show only first row Show all	>Lus10043362 pacid=23168213 polypeptide=Lus10043362 locus=Lus10043362.g ID=Lus10043362.BGIv1.0 annot-version=v1.0 MEEVATILLVTILTAIPIILFLQKLVQKRIRTPPGPWKLPIIGNLHQMVSGNLLPHRRLRDLATIYGPLMHLQFGEVSTVVVSSAELAREFLQTKDINFA RRPYVPSAHTIFYEGRDILFGNGEHWKHMRKICLHELLGAKRVKSLVPTIEQEVNELVTSILQKPRSSSSGINIGRMLVSLGISLISRTAFGKMKKHSES FSPVGREIFRAVEGSSLWDLFPSSYLVRLLTGTESKLKKLHKEADAILQTIIDDHIAKRAANTNSIVHDEDLVDVLLNQELEIPLTNNDIKAVLLDMFLG GGDTASATIEWALSELMINSQVMQKVQKEVRDRFDGKGKIDDYGDLDQLKYLKLVIKETLRLHPPAPLLVPREAREATVIHGYLIPAETRITINAWAIAR DRHDWGEPEKFNPERFINDLSSSTTDYSKGLDFSMIPFGSGRRICPAVHYGMALVTICLANLLYHFDWQLPPGITSENLDMSEDFGIAVKKKQDLFLIPI PYHPKAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10043362 [exp]	0	1
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	7.7	0.7238
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	16.2	0.6832
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	61.3	0.6715
AT5G28150			Plant protein of unknown funct...		Lus10020240 [exp]	76.9	0.6532
AT3G45740			hydrolase family protein / HAD...		Lus10001969 [exp]	82.4	0.6352
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	110.8	0.6420
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	117.1	0.6608
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	154.0	0.6336
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	165.6	0.6409

Compare expression of checked genes

Lus10043362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.