Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22780 1650 / 0 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 1645 / 0 ALPHA-ADR alpha-adaptin (.1.2.3) AT1G23900 285 / 9e-82 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G60070 276 / 5e-79 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G31730 195 / 4e-51 Adaptin family protein (.1) AT1G23940 120 / 3e-28 ARM repeat superfamily protein (.1) AT1G48760 87 / 4e-17 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT4G23460 50 / 1e-05 Adaptin family protein (.1) AT4G11380 49 / 2e-05 Adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019520 [exp] 2000 / 0 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10020522 [exp] 1883 / 0 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 1868 / 0 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10012988 [exp] 272 / 2e-77 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 269 / 3e-76 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 228 / 5e-62 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 213 / 2e-57 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10037271 [exp] 193 / 2e-50 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 190 / 3e-49 AT1G31730 1343 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189700 [exp] 1747 / 0 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 1736 / 0 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.016G104700 [exp] 274 / 6e-78 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 273 / 1e-77 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 194 / 8e-51 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 99 / 7e-21 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 99 / 9e-21 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.001G101400 [exp] 58 / 4e-08 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 52 / 3e-06 AT4G23460 1471 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF02296 [flax] [poplar] Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043363 pacid=23168291 polypeptide=Lus10043363 locus=Lus10043363.g ID=Lus10043363.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCTGGCATGAGAGGACTCTCCGTCTTTATCAGCGACATTCGTAATTGTCCAAACAAAGAGCAGGAGAGGGTCCGCGTTGATAAAGAGCTCG GTAATGTCCGTACTCGCTTCAAAAATGACAAGGCCTTGAGTCCATACGAGAAGAAGAAGTACGTTTGGAAGATGCTTTACATTTACATGCTTGGTTATGA TGTAGATTTTGGTCATATGGAAGCTGTTTCCTTAATATCTGCTCCAAAGTATCCCGAAAAGCAGGTTGGCTACATTTCGACAGCTTGTTTACTCAATGAG AACCATGATTTTCTCCGATTGGCAATAAATACTGTGCGAAACGACATTATTGGCCGGAATGAAACATTTCAGTGCCTTGCATTGACCCTGGTTGGAAATA TTGGTGGGAGAGAGTTTGCCGAATCATTGGCAGCTGACATATCCAGCAGCTGCAGACCTCTTGTAAGAAAAAAAGCTGCTTTATGTTTGCTGCGCTTATA TAGGAAAAATCCTGATGTTGTGAACGTGGATGGCTGGGCGGATCGCATGGCACAACTCCTTGATGAACGCAATCTTGGTGTTTTGACATCTTCTATGAGT CTACTTGTTGCTTTAGTGTCAAATAATCATGAGGCATACTGGAGTTGTCTGCCAAAATGTGTGAAGACATTGGAACGACTTGCTAGGAATCAGGACATAC CCCAAGAATACACTTACTATGGTATCTCATCTCCTTGGCTTCAGGTTAAAACAATGAGGGCTCTTCAGTATTTCCCTACAATAGAAGATCCTAACACAAG AAGATCGTTGTTTGAGGTCTTACAGCGAATATTAATGGGAACTGATGTTGTGAAAAATGTAAACAAGAACAATGCATCGCATGCTGTTCTCTTTGAGGCT CTTGCTCTCGTCATGCATCTTGATGCCGAAAAAGAAATGATGTCTCAATGTGTGGCCCTCCTAGGGAAATTTATTGCAGTTAGGGAACCTAATATTCGGT ACCTTGGCCTGGAAAATATGACACGAATGTTGATGGTAACTGACGTACATGATATTATCAAACGACACCAGGCTCAGATTATCACCTCATTGAAGGATCC TGATATCAGCATACGTCGGCGTGCTCTTGATTTACTTTATGGCATGTGTGACGTGTCAAATGCAAAGGATATAGTTGAAGAGTTATTACAGTACCTCAGC TCATCAGATTTTTCAATGCGTGAGGAATTATCTCTAAAAGCTGCTATCCTTGCCGAGAAGTTTGCGCCTGATCTATCATGGTATGTGGATGTTATACTTC AGTTGATCGACAAGGCTGGAGATGTTGTTAGTGATGACATATGGTTTCGGGTTGTGCAGTTTGTTACTAACAATGAAGACCTGCAGCCTTATGCAGCAGC AAAAGCAAGAGAGTACATTGGCAAACCTGCCATTCATGAGACAATGGTCAAGGTCAGTGCATATATCCTAGGAGAGTATGGGCACCTCTTGGGCAGACGG CCAGGATGTAGCCCGAAGGAATTATTTACCATTATACACGAAAAGCAGCCTACTGTCTCAACCTCCACTATTCCAATTCTTCTCTCCACTTATGCTAAGA TATTAATGCACACTCAGCCTCCAGAACCAGAACTGCAACATCAGATCTGGGCTATATTTAACAAATATGAAAGTTGCATCGATGTTGAGATTCAACAACG AGCAGCCGAGTATTTTGCGTTAAGTAGGAAAGGTGCATCCCTAATGGACATATTGGCAGAAATGCCTAAATTTCCTGAGCGCCAGTCTGCATTGATAAGA AAAGCTGAAGATGCTGAGGTTGATACTGCGGAACAAAGTGCTGTCAAGTTACGGGCACAACAGATGTCAAATGCATTAGTTGTAGCTGATCAACGTCCTG CTAATGGAACGCCAGCCCCGCCCTTTGTAGGCCATCTTAGTCTGGTAAAGGTGCCCAGTGAGACAGTTGATGCGAATCCAGGAGACCCAGGACTGACCCA GCCGAATGGAACCGTATATAAAGAAGATCCTCAGCCTCAAGATCTTATCGGTGACCTTTTGGGTACGTTGAGTATTGAAGGTCCTCCTGAAGCTGTTGCC CAATCTGGACATAGTGCGACGGCTGAAGTGGAAGGTGTTCCTAGTGTGGATGACCGTGCTGCTCTTGTACCTGTTGGAGAAGACACAAGTTCAGTCCAGC CTATAGGAAATATCAGCGAACGATTCTATGCATTGTGCTTGAAGGATAGTGGTGTCCTGTACGAGGATCCATACATCCAGATTGGGATTAAAGCAGAGTG GAGAGTACATCAAGGACGTCTAGTTCTTTTTCTGGGAAACAAAAACACTTCTCCTCTTGATTCCGTTCAGGCCCTCATATTACCTCCTGCTCATTTGAAG GTGGAGCTCTCACTAGTACCTGAAACTATTCCTCCTCGGGCGCAGGTACAATGCCCTCTTGAATTCACAAATCTTCGCCCAAGCAGGGATGTTGCGGTTC TGGACTTCTCTTACAAATTTGGTCCTTCCTTGGTAAATGCCAAGCTCCGCCTTCCTGCTGTTCTCAACAAATTTTTTCAGCCCATAACAGTGTCAGCTGA AGAATTTTTCCCGCAATGGAGATCTCTTTCAGGCCCTCCTTTGAAGCTTCAGGAAGTTGTTAGAGGTGTAAGACCATTGCCTCTTCCCGAAATGGCAAAT CTTTTCAACAGTTTCCGGTTGACGGTCTGTCCAGGGCTTGATCCGAATCCAAACAACTTAGTGGCAAGCACTACCTTTTACTCCGAAACTACACGTGCCA TGCTTTGCTTGGTGAGAATCGAAACAGACCCAGCAGATAGAACGCAGTTGCGAATGACTGTTGCCTCTGGTGACCCAACACTCACGTTCGAGTTAAAAGA GTTCATGAAGGAGCAATTAGTCGGCATCCCTATAGGAGGAGGACCACGTTCACCAGGACGACCTCCAGTAGCAGCAGCTCAGATAAGTCAGCTAGCCACA GCATCGACTCCTCCAGTAGCTGCTTCGCAAGATCCGGGAGCATTGTTAGCCGGTTTGTTGTGA
AA sequence Show only first row Show all	>Lus10043363 pacid=23168291 polypeptide=Lus10043363 locus=Lus10043363.g ID=Lus10043363.BGIv1.0 annot-version=v1.0 MALSGMRGLSVFISDIRNCPNKEQERVRVDKELGNVRTRFKNDKALSPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYISTACLLNE NHDFLRLAINTVRNDIIGRNETFQCLALTLVGNIGGREFAESLAADISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERNLGVLTSSMS LLVALVSNNHEAYWSCLPKCVKTLERLARNQDIPQEYTYYGISSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEA LALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLS SSDFSMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDVVSDDIWFRVVQFVTNNEDLQPYAAAKAREYIGKPAIHETMVKVSAYILGEYGHLLGRR PGCSPKELFTIIHEKQPTVSTSTIPILLSTYAKILMHTQPPEPELQHQIWAIFNKYESCIDVEIQQRAAEYFALSRKGASLMDILAEMPKFPERQSALIR KAEDAEVDTAEQSAVKLRAQQMSNALVVADQRPANGTPAPPFVGHLSLVKVPSETVDANPGDPGLTQPNGTVYKEDPQPQDLIGDLLGTLSIEGPPEAVA QSGHSATAEVEGVPSVDDRAALVPVGEDTSSVQPIGNISERFYALCLKDSGVLYEDPYIQIGIKAEWRVHQGRLVLFLGNKNTSPLDSVQALILPPAHLK VELSLVPETIPPRAQVQCPLEFTNLRPSRDVAVLDFSYKFGPSLVNAKLRLPAVLNKFFQPITVSAEEFFPQWRSLSGPPLKLQEVVRGVRPLPLPEMAN LFNSFRLTVCPGLDPNPNNLVASTTFYSETTRAMLCLVRIETDPADRTQLRMTVASGDPTLTFELKEFMKEQLVGIPIGGGPRSPGRPPVAAAQISQLAT ASTPPVAASQDPGALLAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	0	1
AT3G28430			unknown protein		Lus10011235 [exp]	1.4	0.9074
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	2.0	0.8852
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	3.2	0.9181
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	6.5	0.8554
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	9.0	0.7978
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	16.7	0.8388
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	17.0	0.8265
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	17.8	0.7983
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	18.0	0.8922
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	18.9	0.8150

Compare expression of checked genes

Lus10043363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.