Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22790 417 / 2e-144 RER1 reticulata-related 1 (.1) AT2G37860 380 / 6e-130 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G12470 112 / 1e-27 Protein of unknown function (DUF3411) (.1) AT2G40400 91 / 1e-19 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G08640 88 / 4e-19 Protein of unknown function (DUF3411) (.1) AT3G56140 89 / 5e-19 Protein of unknown function (DUF399 and DUF3411) (.1) AT3G08630 86 / 3e-18 Protein of unknown function (DUF3411) (.1) AT5G24690 74 / 3e-14 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019521 [exp] 416 / 5e-145 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10012657 [exp] 348 / 5e-119 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10024346 [exp] 330 / 2e-112 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10016379 [exp] 110 / 1e-26 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 107 / 7e-26 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 99 / 1e-22 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 99 / 2e-22 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 96 / 5e-21 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 95 / 8e-21 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150400 [exp] 438 / 1e-152 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G103100 [exp] 416 / 9e-144 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G051800 [exp] 113 / 1e-27 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 110 / 7e-27 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 102 / 5e-24 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 96 / 4e-21 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.016G140700 [exp] 82 / 6e-17 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 78 / 1e-15 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 74 / 3e-14 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 74 / 4e-14 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10043364 pacid=23168377 polypeptide=Lus10043364 locus=Lus10043364.g ID=Lus10043364.BGIv1.0 annot-version=v1.0 ATGGCGATTCCTTCGTCGTCCGCCGGCGGCCTCCGACTCTCATTTGTCGACAACTCCGCTCCCCTCAACCAATGCACATCCGCCATGCTCGATGCTAGGA TCTTTTGTCAGCAGATGCCGTCCACCAATCTCAAAATCAAGCTATCAGCGTCTCAGTGGCAGTGTCCCTCCGCCAGCTTCCGCCGTGGAATCAATTGCGC GAAATCGGAGTTCGAGGCTAATTCGATTAAGGACTCGTTGACAAGCGACGTTTCTCGACCTGATGACGGCGGCCGCGGTGATGGATTTGGAGGAAACGGA GGGTCTCCTGGCGGTGGTGATGGTTTTGGAGGAAACGGAGTGTCTCCCGGCGGCGGTGATGGCGATAATGGGGAGGAGGATGAGTTTGGGCCGATAATGA AATTCGATGATGTAATCAGAGAAACAAATGCGCGAGGAGCGAAACTTCCTGCCGATATGCTGGCAGCTGCTGAGACTACCGGAATCAGGGAGAAGTTTCT CCTTCGATACCTGGAATTGCAGGATGCAGGTTGGCCGCTGGGGTTCTTAATGAACCATTTTTCCATGCTGCGCAATCGAATGATGGCTGATCCTGATTTC CTCTTCAAAGTTGGAACCGAGGTAGTTATCGATTCTTGTTGTGCAACGTTTGCTGAAGTTCAGAAAAGGGGAAAAGATTTCTGGTCAGAGTTTGAGTTGT ATGCAGCTGATCTTTTGGTTGGTATTGTTGTTGATATTGCTCTGGTTGGTATGTTAGCCCCTTATGCTCGAATTGGGAAGCCTTTGTTGTCCAAAGGAGG TTTGTTTGGCAACATAAAGCAGACCTGTGCTGCTCTTCCCAGCAGTGTGTTTGAGGCTGAGAGACCAGGATGTAGGTTCACTGTGAAGCAGCGAGTGGCC ACTTATTTCTATAAGGTATTGCATGTTCCCCACCTCAATCTTTTTGTTGCACTGACAACGAGCGTGAAGAAGTCGGAAGAGGACATTCCTATTCCGCCTC TACTAAAAAGTGCAGCCCTCTGGGGTGTATTCCTGGCTGTATCTTCAAACACTCGGTACCAGATCATCAACGGGCTGGAACAAGTGGTGGAAGCATCGGC TTTGGCGAGACAAGTCCCTCCGCTGTCGAAGGCATTCACTGTTGGGGTGAGATTCGCCAACAACATATACGGAGGGATGCAGTTTGTGGACTGGGCAAAA TTGAGCGGAGTTCAGTAA
AA sequence Show only first row Show all	>Lus10043364 pacid=23168377 polypeptide=Lus10043364 locus=Lus10043364.g ID=Lus10043364.BGIv1.0 annot-version=v1.0 MAIPSSSAGGLRLSFVDNSAPLNQCTSAMLDARIFCQQMPSTNLKIKLSASQWQCPSASFRRGINCAKSEFEANSIKDSLTSDVSRPDDGGRGDGFGGNG GSPGGGDGFGGNGVSPGGGDGDNGEEDEFGPIMKFDDVIRETNARGAKLPADMLAAAETTGIREKFLLRYLELQDAGWPLGFLMNHFSMLRNRMMADPDF LFKVGTEVVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDIALVGMLAPYARIGKPLLSKGGLFGNIKQTCAALPSSVFEAERPGCRFTVKQRVA TYFYKVLHVPHLNLFVALTTSVKKSEEDIPIPPLLKSAALWGVFLAVSSNTRYQIINGLEQVVEASALARQVPPLSKAFTVGVRFANNIYGGMQFVDWAK LSGVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22790		RER1	reticulata-related 1 (.1)		Lus10043364 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	6.6	0.7653
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	8.4	0.8280
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	14.3	0.7837
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	19.0	0.7862
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	20.0	0.7856
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	20.8	0.7553
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	24.3	0.7826
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	25.2	0.7734
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	27.3	0.7713
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	30.2	0.6957

Compare expression of checked genes

Lus10043364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.