Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22750 1433 / 0 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 972 / 0 Helicase protein with RING/U-box domain (.1) AT5G05130 389 / 8e-120 DNA/RNA helicase protein (.1) AT1G50410 374 / 4e-113 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61140 374 / 1e-111 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G20010 350 / 1e-103 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 308 / 2e-90 Helicase protein with RING/U-box domain (.1) AT1G02670 287 / 5e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16600 283 / 5e-83 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 251 / 2e-68 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041156 [exp] 847 / 0 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 403 / 5e-125 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 371 / 3e-110 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 351 / 2e-104 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 342 / 6e-98 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10019523 [exp] 295 / 3e-92 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1) Lus10030044 [exp] 296 / 2e-84 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10018465 [exp] 233 / 1e-62 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10027296 [exp] 216 / 1e-61 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189400 [exp] 1490 / 0 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 937 / 0 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.006G035700 [exp] 370 / 2e-112 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.007G000700 [exp] 370 / 2e-111 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.016G033800 [exp] 342 / 1e-102 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 333 / 7e-99 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 324 / 1e-95 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 306 / 3e-89 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 304 / 1e-88 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.011G046400 [exp] 255 / 1e-69 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08797 [flax] [poplar] HIRAN HIRAN domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043365 pacid=23168333 polypeptide=Lus10043365 locus=Lus10043365.g ID=Lus10043365.BGIv1.0 annot-version=v1.0 ATGGGAAGCAAGGTCAGTGACGAGATGCTCACCACCGTCCGATCCATCGTCGGCTCTGATTTCTCCGACATGGATATCATCAGAGCTCTACACCTCGCCA AACACGACCCCACCGCCGCCATTAACATAATCTTCGACACGCCAACTTTCAGTTCTAAACAGTTTCAATCTCCGAGGAGTCCCAATTCAAACCCTACTCC CAGGCGTAGACCTGTTTCTGCTAAATCAAGCAACGTCGAGAAGGAGATTGGCGAGAATTGCGATTTGGTTGTGGACGAGGATGCTAATCCGACAGGGAGT GACTCGGGCGAGCGGAATGAGCAGAAAGTGAGGTTGTCGGGTTCGAGCTCGTCCACAGGTTCTGTTGGGGACGAGTGGTGGTGTTTGGGGGATGGGGTGG TGGCAGGGTTATCCACGAGTAAAGGGAGGAAAGTTAAGGTTGGCGATGAAGTCATGTTTACATTTCCAGTCAACAGGAAGAACAAGTCTTCAGCAGCAAA GGGTTTTGGAAAGGGAAGATCGGTCGCCGCGGCTTGCTCAGAGATTGTGAGGTTTTCCACTGTAAATGGTGGGGAGATTGGTCGAATACCAAATGAATGG GGTAGGTGTCTTCTTCCCCTCGTGAGGGATAAGAAAGTTAAGATAGAAGGGCACTGTAAGTCAGCTCCCGAGATACTTGGAATTATGGATACAATCGAGT TATCAGTAAGTGCCATGTTCCACAAGTTTCAACAGACCTCACTGAAAGCAGGAAGCAATCCTTCTGAAGAAACAGTTGTTCATCCCTTCCCAAATTTGTT CCGGTTACTTGGTCTAACTCCTTTTAAGAAGGCTGCACTTACCCCAGCTGACTTGTACACAAAGAAACGGCCTTTTCTCTCCAAGGATACTTCTGGTCAT GCATCATTAGCGCATGCCAGGAAGTCAAACCAACTGAGAAATGAAAATGATTCAGAGGATGAAGAATTCATTTCAGAGGCCGATCTTGATCAGATTGTCG GCGTAGGACAGAGCAACGAGCTAGCAGAAATGGATCCTCCCTCTACCCTCCAGTGTGAACTTCGTTCTTACCAAAAGCAGGCCTTGCATTGGATGATGGA GCTAGAAAAAGGGCAATGTGTGGATGAGGCTGCAACAACACTTCATCCCTGTTGGGAGGCTTACCACACAGCAGACAAGAGAGGGCTTGTCATCTACTTG AATGCATTTTCAGGTGATGCAACTGTAGATTTCCCAAGCACTCTTCAGATGGCTAGGGGAGGAATACTAGCTGATGCAATGGGACTGGGGAAGACTATCA TGACTATATCCCTCTTACTCACTCATTCAGAAAAGTCCGGGTCATCAAGTTGTATATCCTTGAAACATTCCAGTGAAGGTGATGCAGTCGGTTATGCTTC AAATCAATCATCGAGTCCCTTGAATGGGACAAAACTTTCAGGGTTTGATAAGCAGGAAAAGCAGAGGAAGGCACTCAGTTTTGGTGGCAATCTTATTATA TGTCCTATGACTCTTCTGGGACAGTGGAAGGCAGAGATAGAAACCCATTCAGAACCAGGTTCTCTTTCTGTGTACATTCATTATGGTCAAAGTAGAGCAA AAGATGCAAAACTGCTGGCACAATATGATGTAGTAATAACCACATATGGCGTTTTAGCTTCCGAGTTTTCTGGCGAGACTGCTGCAGAGAATGGGGGCCT TTACTCAGTTCATTGGTTTAGAGTGGTTCTTGATGAAGCACATACTATAAAATCCTCAAAAAGTCAGATTTCCCTGGCTGCTTCAGGTTTGATTGCTGAT CGGCGCTGGTGTCTCACAGGGACTCCAATTCAGAACAAGTTGGAAGATCTTTACAGTCTTATTCGGTTTTTGAAGGTAGAGCCTTGGGAGAATTGGGCAT GGTGGAGTAAGCTTATCCAAAAGCCATACGAGGAGGGTGATGAGAGAGGACTAAAGTTGGTCCAGTCCATTCTGAAAACTATTATGCTCAGGAGAACAAA ATCGAGTACAGATCGAGAAGGCAGGCCAATCTTAGATCTTCCCCCAGCTGATATTCAGGTGATTGATTGCGAACTCACAGACGCTGAAAGAGATTTTTAC GATGCCCTCTTTCGAAGATCCAAGGTGAAGTTTGATCAATTTGTCGAGCAGGGGCGGGTTTTACATAATTATGCTTCAATATTAGAGTTGCTTTTGCGTC TTCGTCAATGCTGTGATCATCCGTTTCTTGTGATGAGTCGAGGTGATACACAAGAATACTCGGATATGAACAAGTTGGCTAAGCGTCTCCTGAAAGGTGG ACGGAGTGTCCTGCAGAAACATGACCAAGATGTTCCTTCAGTGGCATATATCCAAGAAGTTGTGGATGAACTCCAGAAGGAAGAACAAGGAGAGTGTCCT ATCTGTCTTGAAGCTTTTGAAGATGCGGTATTAACACCTTGTGCTCATCGTCTTTGTCGTGAATGCCTGTTATCAAGTTGGCGAAATGCTAGCTCTGGTC TATGTCCTGTTTGTAGAAAAGTCGTAACAAAGCAAGAGCTCATTACTGCTCCCACCGACAGTCGCTTTCAGATTGATGTTGAGAGAAATTGGATTGAATC GTCCAAAGTTATTGCTCTCTTGAGAGAACTTGAAATTCTTCGTGCATCAGGCTCTAAAAGCATCATCTTCAGTCAGTGGACTGCCTTTCTGGATCTATTA CAAATCTCACTTACAAGAAATAACATTTCTTTCCTACGCCTTGATGGAACCCTAAATCAAGGGCAGCGTGAAAAAGTGATAAAACAGTTCTCTGAAGACG ATAATATAATGGTGTTGCTGATGTCATTGAAAGCTGGAGGGGTAGGGATCAATCTAACTGCAGCTTCCAGTGCCTTTGTTATGGATCCATGGTGGAATCC AGCAGTTGAGGAGCAAGCTGTCATGCGCATCCATCGCATTGGACAAACTAAACCAGTAATGATCAAGCGCTTCATTGTTAAGGGTACAGTTGAGGAAAGA ATGGTGGCGGTACAAGCACGCAAGCATAGGATGATATCTGGTGCATTGACTGACCAAGAACTCTTGTATCTCTCTGAGTTGGAAGCATATAAGAAGGGAT CCCTCACGAGACAAACTGAAAGTAGAAATGAGGAGGCTCTATCTCAGTCATCTGCTTCTGTTCGAAATGGAGAGTTTGGTCCTGGAGATGGTGCAGTTCA TGGCCAGATGTATGCATAA
AA sequence Show only first row Show all	>Lus10043365 pacid=23168333 polypeptide=Lus10043365 locus=Lus10043365.g ID=Lus10043365.BGIv1.0 annot-version=v1.0 MGSKVSDEMLTTVRSIVGSDFSDMDIIRALHLAKHDPTAAINIIFDTPTFSSKQFQSPRSPNSNPTPRRRPVSAKSSNVEKEIGENCDLVVDEDANPTGS DSGERNEQKVRLSGSSSSTGSVGDEWWCLGDGVVAGLSTSKGRKVKVGDEVMFTFPVNRKNKSSAAKGFGKGRSVAAACSEIVRFSTVNGGEIGRIPNEW GRCLLPLVRDKKVKIEGHCKSAPEILGIMDTIELSVSAMFHKFQQTSLKAGSNPSEETVVHPFPNLFRLLGLTPFKKAALTPADLYTKKRPFLSKDTSGH ASLAHARKSNQLRNENDSEDEEFISEADLDQIVGVGQSNELAEMDPPSTLQCELRSYQKQALHWMMELEKGQCVDEAATTLHPCWEAYHTADKRGLVIYL NAFSGDATVDFPSTLQMARGGILADAMGLGKTIMTISLLLTHSEKSGSSSCISLKHSSEGDAVGYASNQSSSPLNGTKLSGFDKQEKQRKALSFGGNLII CPMTLLGQWKAEIETHSEPGSLSVYIHYGQSRAKDAKLLAQYDVVITTYGVLASEFSGETAAENGGLYSVHWFRVVLDEAHTIKSSKSQISLAASGLIAD RRWCLTGTPIQNKLEDLYSLIRFLKVEPWENWAWWSKLIQKPYEEGDERGLKLVQSILKTIMLRRTKSSTDREGRPILDLPPADIQVIDCELTDAERDFY DALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDMNKLAKRLLKGGRSVLQKHDQDVPSVAYIQEVVDELQKEEQGECP ICLEAFEDAVLTPCAHRLCRECLLSSWRNASSGLCPVCRKVVTKQELITAPTDSRFQIDVERNWIESSKVIALLRELEILRASGSKSIIFSQWTAFLDLL QISLTRNNISFLRLDGTLNQGQREKVIKQFSEDDNIMVLLMSLKAGGVGINLTAASSAFVMDPWWNPAVEEQAVMRIHRIGQTKPVMIKRFIVKGTVEER MVAVQARKHRMISGALTDQELLYLSELEAYKKGSLTRQTESRNEEALSQSSASVRNGEFGPGDGAVHGQMYA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10043365 [exp]	0	1
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	11.2	0.8838
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	14.1	0.8432
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	14.4	0.8784
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	14.8	0.8571
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	17.7	0.8258
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	19.3	0.8489
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	23.1	0.8741
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	23.8	0.8660
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	28.8	0.8478
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	29.9	0.8442

Compare expression of checked genes

Lus10043365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.