Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54980 257 / 5e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 237 / 1e-70 LOJ LATERAL ORGAN JUNCTION (.1) AT1G12700 172 / 2e-47 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 167 / 7e-46 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61400 164 / 7e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 162 / 2e-44 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 162 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 161 / 5e-44 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12775 157 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 157 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019524 [exp] 534 / 0 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 160 / 5e-43 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 158 / 2e-42 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 152 / 2e-42 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 155 / 2e-41 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012068 [exp] 155 / 2e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 153 / 7e-41 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 152 / 3e-40 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042529 [exp] 152 / 5e-40 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250700 [exp] 330 / 7e-106 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 164 / 5e-45 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 163 / 2e-44 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 162 / 2e-44 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 161 / 4e-44 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 160 / 8e-44 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 160 / 9e-44 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 156 / 3e-43 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 158 / 4e-43 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 159 / 7e-43 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043366 pacid=23168058 polypeptide=Lus10043366 locus=Lus10043366.g ID=Lus10043366.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAAGGCATCCGGACTAGTGTATTCACTGTGTGCTTGTTACAAGGACTCCTCAAGGGACAGGATCTTGAAGAAGCAAACAAGTTATTCGATG AGGCAATTGAAAATGAAATTGCTGATGTCAGCAGCTGTAATTCTTTCTTGTCATTCTTCTGCAATGAGGGCAAGGTAGACGAAGCACAACAAGTATGGGA AAAGATGTTAAGCAAAGGTGTCAAACCTACCATTGTTTCGTACAACATCATGATTCTTGGCTACTGTAGACAAGGTAACTTGGATTTGGCAGGTAGTTTA TTGTCCCAGCTCCAGGACCTGGGTCTCACACCTAATTTGTTCACTCGCACAATTTTGATAGATGGCTGTTCTAAGAACGGTGACGCAGAAACTGCCTTCA GCGTGTTTGAAAAGATGGTTGGGGAGAACATTCTCCCCTCAGATTATACGTACAATAGTGTAATTAACGAGATGTGCAAAGCTGGTCGAACATCTGAAGT ACAAGAGATGCTGAGGAAGTTTACAGAGCACGATTTCACTCCTTCAGCTCTCACATATAACATCATTATTGATGGGTTTGTTAAAGAAGGCTCTCTCAGT TCTGCTTTGGGAGTTAACAAAAAGATGCATGAAGGTGGAATTCTTCCAACTACCATGGATGGATTTTGCAAAAAAGAGGACATGGAACTTGCATGGCAGT TTTTCTGTGAACTCCTCGATGTTGGGCTATCGCCGAATACTGTTGTCTACAATAGCTTGATAAGTGGCTTTAGGAATGTTGAAAATGTGGAGGTTGCACT CAAGTTGTATATGAGAATGCAAGCTGGGGGAGTTCCTTGTGATCTGCAAACTTTCACTACTCTAATTGAAGGTTTGCTAAAGGCAGGTCGAGTACTTCCT GCAACCGATCTCTACTCAAAGATGCTTGCCAAAGGCATCATGCCTGATATCATAACATATGGAGTCCTCATAAATGGTCTTTGTAAACTAGTGACGGGGA GATGTTTTAACAGATCAGAAAGTCAGGGTACAGTGCGTCTCCTGAAACTAATAGTATCAGAAAGCAAGGAAGAGAATAGTGCAGAGAAACAGAGGAGGGG GAGGAAATTTAACAGAAGCCAAGTCAGGCATCTAATGATGCAAACATCATGA
AA sequence Show only first row Show all	>Lus10043366 pacid=23168058 polypeptide=Lus10043366 locus=Lus10043366.g ID=Lus10043366.BGIv1.0 annot-version=v1.0 MKKKGIRTSVFTVCLLQGLLKGQDLEEANKLFDEAIENEIADVSSCNSFLSFFCNEGKVDEAQQVWEKMLSKGVKPTIVSYNIMILGYCRQGNLDLAGSL LSQLQDLGLTPNLFTRTILIDGCSKNGDAETAFSVFEKMVGENILPSDYTYNSVINEMCKAGRTSEVQEMLRKFTEHDFTPSALTYNIIIDGFVKEGSLS SALGVNKKMHEGGILPTTMDGFCKKEDMELAWQFFCELLDVGLSPNTVVYNSLISGFRNVENVEVALKLYMRMQAGGVPCDLQTFTTLIEGLLKAGRVLP ATDLYSKMLAKGIMPDIITYGVLINGLCKLVTGRCFNRSESQGTVRLLKLIVSESKEENSAEKQRRGRKFNRSQVRHLMMQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10043366 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024933 [exp]	6.6	0.8496
AT1G23850			unknown protein		Lus10032153 [exp]	8.4	0.8749
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	13.4	0.8579
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	14.5	0.8613
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	23.9	0.8491
					Lus10003893 [exp]	27.5	0.8440
					Lus10002859 [exp]	32.2	0.8349
AT2G17380		AP19	associated protein 19 (.1)		Lus10042352 [exp]	32.2	0.8328
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	35.0	0.8347
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	38.2	0.8269

Compare expression of checked genes

Lus10043366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.