Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 608 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 573 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 572 / 0 EFR EF-TU receptor (.1) AT3G47110 567 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 562 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 450 / 4e-142 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 436 / 2e-134 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 419 / 3e-130 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 423 / 4e-130 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 422 / 3e-129 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019525 [exp] 1820 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009394 [exp] 1105 / 0 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 649 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 639 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 636 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 633 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 629 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 628 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 626 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037400 [exp] 937 / 0 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 913 / 0 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 664 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 652 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 646 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 641 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 641 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 635 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 635 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 630 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043368 pacid=23168226 polypeptide=Lus10043368 locus=Lus10043368.g ID=Lus10043368.BGIv1.0 annot-version=v1.0 ATGAACTCTACATCCACCGGAGTCCCCGCCGTTTATCTCTGTCTCTTCTTCCTCTCTTTCTTTCTCAAGGTGACATTCGTTGACTCAACGGCTGCTTTGA CTAGTATTGACACAGACAGAGAAGCCTTGCTAGCATTCAAGTCTCATGTATCCTCACAATTCCCTCATGCTTTAGCTTCTTGGGACGACGACCAAACTTC ATCCTCCTCCCCTTGTAATTGGAGTGGAGTTTCCTGCGACGACAGTGGGAAGAACCGAGTTGTGGCGCTTGCTCTTCCCAGTTTGGGACTAGTTGGGTCC ATCACACCTTTCATAGGCAACCTGTCAATGCTTCAGTCGCTGGAACTTCAAAACAATCGGCTGACAGGAAGCCTTCCTGACCAAATCTGCAGTCTTTTTC GCCTGAGGGTTCTGAATGTGAGCACCAACCGATTCACAGGTTCAATCCCCTTGAACATAACTAAGCTGGCCGAGCTCCAAGTTCTCGATTTGTCGATGAA CGAGCTCAGTGGCCGGATTCCAAGTCACCAGCTGGGTTTGCTTCTCAATCTTCAAGTTCTCAACTTGGGAAAAAATCTTCTTTCGGGTCCCATCCCAGGT TCCATATCGAACATCTCTTCACTCCTGGAACTGCATCTCAGCACCAATTCCCTTTCCGGGTTTATTCCTGGTGAGTTGGGTCTTCTCCGGAGCTTGAAAG TTCTTGATTTGACTATCAATGTTCTCACTGGTACAGTTCCACCTTCAATCTACAACATGTCTTCTCTGACGTATTTAGCCTTGGCTTCTAACGAACTGTG GGGTGACATCCCAAGGAATGTTGGGGAGACGCTTCCAAATCTTCTCGTCTTTAGGTTCTGCTTCAACAGGTTCACTGGAGGTATTCCTGGTTCATTGCAC AATCTGACCAATATACGGGTCATTCGAATGGCACATAATCTTCTCGAAGGAACCGTCCCGCCTGGTTTGGGGAATCTGCCGTTTCTGGAGATGTATAATA TTCGTTGCAACAGGATAGTAAGTTCAGGTGACGACGGTCTTGGATTCATCACTTCTTTAACCAACAGTACTCGGCTGAAACTCCTTGCCATTGACGGGAA CCTATTTGAAGGTGAGATTCCTGAATCTGTAGGTGACCTTTCGAAGGATCTGACGCTATTGTACATGGGAGACAATCGGATTCATGGCAGTATACCATCT TCAATTGCCCGCCTTCATGGCTTGACGTTGCTGAACATAAGCTACAATGACATCACTGGAGAAATGCCATACGAAATTGGGCAGTTAGAGAACTTGCAAG AGTTGATTTTGGCTGGAAATAAAATCAGAGGAAGGATTCCAGATTCATTTGGTAAGCTACTAAAGCTGGGTATAGTCGACCTGTCAAGAAATGCATTAAT CGGTAGAATTCCATCATCTTTTGGGAATTTCCACAGCCTTATTTCCTTGGATTTATCTAGCAACAGGTTCAACGGAAGCATACCCAACGAAATTCTGTCT CTCCCAAGCTTGAGCATAGCCTTGAATTTGTCTCACAACTACCTAACTGGAGAATTGAATGAAGATATTGGTCTTCTACACAATATTGCTACCATTGATC TCTCCACCAACTTCATGTCAGGTAGTATTCCTAGCTCAATCAGAAATTGCAAGGGTCTAGTTCGCCTATATCTGGCAAGAAATTCATTCTCGGGAAGCAT CCCAAGCAATGTAAGAGAGCTGAGAGGGTTGGAAGTCCTAGACCTCTCCTACAACAATCTTTCTGGTGACATCCCTCCAGAACTCATCCACCTACAGGCT CTTCAGTTCTTGGACCTTTCGTTCAATAACCTCATGGAAGATTCTTGCAGTGATGAAGCACCTTTAAACCGTTCACATGTCCGATTTGAAGGCAACCCGA AACTTTCCCATTCTAAACCCTGCAAGAATGGTGGAACTAATCACACTACTCGGATGACGGTCTATGTTAGTGTCGCCGCTCTAGCAACACTTACTTTATG CTCTTATCTGTTTATATGGATCTACCTCAGCAAGAACAAAACAAAGACTACTCAAAACTTAGGAAAGGATGAATACCATCTGGTCTCATTTGATGAGCTC CGTTACGCAACCGAGAATTTTAGCAGTGAGAACCTTCTTGGAAGTGGTGGGTTTGGAACAGTGTATAGAGGGAAATTGTCAGATAACAGCGTTGTAGCAA TCAAAGCCTTGAACGTCAAAAGAAGTGGTTCTTGGGACAGCTTTATGGCAGAGTGCAAGGCTCTAAGCAAAGTGAGACATCGGAATATAGTGAAGTTAAT CACAACTTGCTCGAGCTTGGACTCCAAGAACGAAGAGTTCTGGGCTTTAGTTTACGAGTTCCTCCCTAATGGAAGTCTAGCAGACTGGCTAAACGCCAAC AAAGATGGAGGAAAGAGAGATGAGTTGACGCTGCTTCATAGATTGAACATAGCTATTGATGTGGCTAGTGCATTGGATTACCTGCACCATGGGTGTGATG TACCAGTGGTACACTGTGACTTGAAACCCAGCAACATTCTGTTAGACCAAGACATGACGGCCAAAGTTGGCGACTTTGGACTTGCAAAGCTGCTGATAAG CGATCATGAAGCTCCCATCAGCTCTGCACATTTCATTAAAGGATCAATCGGCTACATTCCTCCAGAGTATGGAGTCGGGTCAAAACCTTCGATTGCAGGG GACACTTACAGCTTTGGGGTGATGCTGTTGCAGCTAATAACTGGGAAGAGCCCAATCGACGAGAGCTTGATGGAGAGTGGGGAGAGTCTGATGGGTTGGG TCGGATCGTCGTACCCGGGAGAAGTGATGAAAGTGGTGGATCCGAAGGTGTTTCCATACGTAAAACCAGAGACGGAAGAGCAATGCATAGTCAAGATTCT GGGAGTTGGGCTGTGGTGTAGCGCCAGTTCCCCAGAGGGACGAATGCCCATGAGGGATGCTTTATGGAATTTGCAGACTGCGAGAAGCGATCTTGTTGCC AGTTATCTTCGCAGGCTCAAACGATAG
AA sequence Show only first row Show all	>Lus10043368 pacid=23168226 polypeptide=Lus10043368 locus=Lus10043368.g ID=Lus10043368.BGIv1.0 annot-version=v1.0 MNSTSTGVPAVYLCLFFLSFFLKVTFVDSTAALTSIDTDREALLAFKSHVSSQFPHALASWDDDQTSSSSPCNWSGVSCDDSGKNRVVALALPSLGLVGS ITPFIGNLSMLQSLELQNNRLTGSLPDQICSLFRLRVLNVSTNRFTGSIPLNITKLAELQVLDLSMNELSGRIPSHQLGLLLNLQVLNLGKNLLSGPIPG SISNISSLLELHLSTNSLSGFIPGELGLLRSLKVLDLTINVLTGTVPPSIYNMSSLTYLALASNELWGDIPRNVGETLPNLLVFRFCFNRFTGGIPGSLH NLTNIRVIRMAHNLLEGTVPPGLGNLPFLEMYNIRCNRIVSSGDDGLGFITSLTNSTRLKLLAIDGNLFEGEIPESVGDLSKDLTLLYMGDNRIHGSIPS SIARLHGLTLLNISYNDITGEMPYEIGQLENLQELILAGNKIRGRIPDSFGKLLKLGIVDLSRNALIGRIPSSFGNFHSLISLDLSSNRFNGSIPNEILS LPSLSIALNLSHNYLTGELNEDIGLLHNIATIDLSTNFMSGSIPSSIRNCKGLVRLYLARNSFSGSIPSNVRELRGLEVLDLSYNNLSGDIPPELIHLQA LQFLDLSFNNLMEDSCSDEAPLNRSHVRFEGNPKLSHSKPCKNGGTNHTTRMTVYVSVAALATLTLCSYLFIWIYLSKNKTKTTQNLGKDEYHLVSFDEL RYATENFSSENLLGSGGFGTVYRGKLSDNSVVAIKALNVKRSGSWDSFMAECKALSKVRHRNIVKLITTCSSLDSKNEEFWALVYEFLPNGSLADWLNAN KDGGKRDELTLLHRLNIAIDVASALDYLHHGCDVPVVHCDLKPSNILLDQDMTAKVGDFGLAKLLISDHEAPISSAHFIKGSIGYIPPEYGVGSKPSIAG DTYSFGVMLLQLITGKSPIDESLMESGESLMGWVGSSYPGEVMKVVDPKVFPYVKPETEEQCIVKILGVGLWCSASSPEGRMPMRDALWNLQTARSDLVA SYLRRLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	0	1
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	7.9	0.8836
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	8.6	0.8778
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	14.4	0.8630
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	14.5	0.8599
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	15.4	0.8342
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	23.1	0.8268
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	24.7	0.8214
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10031581 [exp]	25.5	0.8452
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	27.8	0.8240
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	29.2	0.8712

Compare expression of checked genes

Lus10043368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.