Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27740 198 / 1e-65 Family of unknown function (DUF662) (.1) AT2G36410 187 / 9e-61 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 186 / 1e-60 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 176 / 7e-57 Family of unknown function (DUF662) (.1) AT3G52900 164 / 4e-52 Family of unknown function (DUF662) (.1) AT2G36355 151 / 4e-47 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT5G03660 147 / 2e-45 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019529 [exp] 301 / 2e-106 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10027724 [exp] 196 / 2e-64 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 194 / 8e-64 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 190 / 3e-62 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 166 / 5e-52 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10034160 [exp] 142 / 1e-43 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 139 / 1e-41 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147500 [exp] 215 / 3e-72 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 213 / 2e-71 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 177 / 3e-57 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 165 / 9e-53 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10043372 pacid=23168163 polypeptide=Lus10043372 locus=Lus10043372.g ID=Lus10043372.BGIv1.0 annot-version=v1.0 ATGACTACACAAAAACAGATGCTGGATCAGCAGCAATTGCAGATGCAGATGCAGAGGATGGTGCTGAAGAACTCTGGCCTCATATCCTCGAATGATCAGA GTTTCCTTCTGGACGACAAGGAAGAGGAAATGTCCAAGTCCGCGTTGGCAATGTTCCGCGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTCAG AGGCAAAGTCGAGGCTCAGATCGGACGCGCTGAAGAGGCCACCAAGCGCTTAGCTGAGATTCGACAAGAGCTTGAAGCATTGACAGATCCGTTGAGGAAG GAAGTATCAATGGTTCGTAAGCGGATTGATATTGTCAACCGTGAACTGAAGCCATTAGGCCTTAATTTCCAAAAGAAGGAAAGGGAATACAGAGAAGCAC TTGAAGCCTTCAACGAGAAGAACAAGGAGAAAACTCAACTGGTTTCCAAGTTGATGGAGATGGTGGGTGAGAGTGAGAGACTGAGGATGAAGAAGCTGGA GGAGTTGAGCAAACACATTGGAAATCTTCGCTGA
AA sequence Show only first row Show all	>Lus10043372 pacid=23168163 polypeptide=Lus10043372 locus=Lus10043372.g ID=Lus10043372.BGIv1.0 annot-version=v1.0 MTTQKQMLDQQQLQMQMQRMVLKNSGLISSNDQSFLLDDKEEEMSKSALAMFRAKEEEIERKKMEVRGKVEAQIGRAEEATKRLAEIRQELEALTDPLRK EVSMVRKRIDIVNRELKPLGLNFQKKEREYREALEAFNEKNKEKTQLVSKLMEMVGESERLRMKKLEELSKHIGNLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	0	1
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	3.7	0.8702
AT3G52900			Family of unknown function (DU...		Lus10034160 [exp]	4.5	0.7784
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	7.9	0.8551
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	9.9	0.7893
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	11.0	0.7892
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	12.8	0.7545
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	13.3	0.8066
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10005280 [exp]	14.8	0.7363
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	17.7	0.7900
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	20.4	0.7859

Compare expression of checked genes

Lus10043372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.