Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 114 / 5e-29 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G63350 51 / 3e-07 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 49 / 2e-06 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G44700 46 / 1e-05 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G53350 43 / 0.0001 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G27180 42 / 0.0002 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 42 / 0.0003 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G19330 41 / 0.0004 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT3G46730 41 / 0.0004 NB-ARC domain-containing disease resistance protein (.1) AT1G59780 41 / 0.0006 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041243 [exp] 294 / 1e-93 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 227 / 1e-68 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 221 / 1e-66 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 217 / 4e-65 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 215 / 3e-64 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 206 / 7e-61 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 126 / 5e-34 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 124 / 3e-32 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 120 / 5e-31 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134500 [exp] 136 / 1e-36 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 132 / 6e-35 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 131 / 1e-34 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 130 / 1e-34 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 128 / 1e-33 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 123 / 6e-32 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 123 / 6e-32 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 121 / 2e-31 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 117 / 5e-30 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G009101 [exp] 103 / 1e-25 AT3G07040 153 / 3e-40 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043373 pacid=23168242 polypeptide=Lus10043373 locus=Lus10043373.g ID=Lus10043373.BGIv1.0 annot-version=v1.0 ATGGATAGCTTGTTCAACTTAAGGTTCTTGAACTTGTTTGGCACTCAAGTGAAAAGACTACCAAACTCTATAGGTAAGTTACAAAACCTTCAGACTCTAG ATATCATAAGTACCAAAGTAGCAACTCTTCCCAAGGAAATCATGAAGCTGCAGAAGCTACGTCACCTAGTTACAGGCTATGTGAAACGTACGACGACATC GAAGGAGTACAATGTAATGTATGGTATCTGTGTTTTGTCCGGATCGGATATCAGTTGTTTAAAGAACTTACAATCTCTACGTTTAGTGGAAGCAAGTAGG GACTTGATAAAGCAACTGGGACAGATGACACAGCTAGTAGTACTGGGAATCACAAACGTTAAAGGGAAAAGTCAAATGGACGACTTGTGCTGCTCAATAA AGAACATGCCTTTCCTGCAGCAGTTAAGCATGGCAGCTGGGAACGAGGATGAGATCCTTCAGTTCGACGAACTCGGTCAATCTCCTCCGTTGTCACGTCT TCAATATCTCAGCTTGTATGGGAAGTTAGACAAGTTCCCTAATTGGGTTTCCTCCCTGCCACGTCTCAGTGATTTGCAGATGCACTGGAGCAGACTGCCA AAGGAAGAGGACCCACTGCAGCATTTGCATAGTTTGCGGAACTTGGGCAATATTGTTCTTAACAATGCCTATCAAGGGGACAGAGTTAAATTGTCCAAGA GGCTTTGA
AA sequence Show only first row Show all	>Lus10043373 pacid=23168242 polypeptide=Lus10043373 locus=Lus10043373.g ID=Lus10043373.BGIv1.0 annot-version=v1.0 MDSLFNLRFLNLFGTQVKRLPNSIGKLQNLQTLDIISTKVATLPKEIMKLQKLRHLVTGYVKRTTTSKEYNVMYGICVLSGSDISCLKNLQSLRLVEASR DLIKQLGQMTQLVVLGITNVKGKSQMDDLCCSIKNMPFLQQLSMAAGNEDEILQFDELGQSPPLSRLQYLSLYGKLDKFPNWVSSLPRLSDLQMHWSRLP KEEDPLQHLHSLRNLGNIVLNNAYQGDRVKLSKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	0	1
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	6.9	0.7694
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	6.9	0.8055
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	7.1	0.8124
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	9.5	0.7682
AT5G06270			unknown protein		Lus10021305 [exp]	9.5	0.7594
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	9.7	0.7936
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	10.8	0.8165
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10036733 [exp]	18.3	0.7540
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022090 [exp]	18.8	0.7369
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	19.7	0.7619

Compare expression of checked genes

Lus10043373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.