Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 50 / 1e-08 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 40 / 6e-05 BGLU16 beta glucosidase 16 (.1.2.3) AT5G44640 38 / 0.0003 BGLU13 beta glucosidase 13 (.1) AT5G42260 38 / 0.0003 BGLU12 beta glucosidase 12 (.1) AT1G47600 37 / 0.0008 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT5G48375 37 / 0.001 BGLU39, TGG3 BETA GLUCOSIDASE 39, thioglucoside glucosidase 3 (.1) AT2G44450 37 / 0.001 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019531 [exp] 106 / 3e-28 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 59 / 2e-11 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 59 / 2e-11 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 53 / 3e-09 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 51 / 7e-09 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 46 / 6e-07 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 46 / 6e-07 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10011828 [exp] 44 / 4e-06 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2) Lus10039513 [exp] 41 / 4e-05 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227300 [exp] 74 / 5e-17 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 74 / 6e-17 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.003G211100 [exp] 60 / 5e-12 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 60 / 5e-12 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.001G227200 [exp] 58 / 3e-11 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.004G040700 [exp] 44 / 3e-06 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G223900 [exp] 42 / 2e-05 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223500 [exp] 41 / 2e-05 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 41 / 2e-05 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G224000 [exp] 41 / 2e-05 AT3G60120 526 / 0.0 beta glucosidase 27 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043374 pacid=23168071 polypeptide=Lus10043374 locus=Lus10043374.g ID=Lus10043374.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTCGGATTATCTTCCTTTCTTCTTGCTTTCTTGGCCATAGACTCTCCCAACTTCAGTGCAAAACAGTCGAAGATGTTGACCGGGTCTTTG GATTCCACGGGGTCAACTACTACACTACAAACTTCGCCGCCGACAATCCTGTTCTTCACGGTCCCAACACCAGTTACTCTATCGACTCCCAAGCTCTTTT CACAACTTCCAAGGCTGGAGTTCCAATCGGTACGCCGTACAAGAACCCACCAATCTACATCACTGACAATGGTAATTAA
AA sequence Show only first row Show all	>Lus10043374 pacid=23168071 polypeptide=Lus10043374 locus=Lus10043374.g ID=Lus10043374.BGIv1.0 annot-version=v1.0 MSSSRIIFLSSCFLGHRLSQLQCKTVEDVDRVFGFHGVNYYTTNFAADNPVLHGPNTSYSIDSQALFTTSKAGVPIGTPYKNPPIYITDNGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10043374 [exp]	0	1

Compare expression of checked genes

Lus10043374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.