Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22510 911 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 770 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 756 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 749 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT4G09510 608 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 604 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G34860 598 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G22650 593 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G72000 583 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019532 [exp] 1178 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10017095 [exp] 775 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10010900 [exp] 772 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10037817 [exp] 772 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10031431 [exp] 771 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10033144 [exp] 608 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 607 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 601 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10042390 [exp] 598 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186500 [exp] 931 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 917 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 900 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 780 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 765 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 763 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.009G129000 [exp] 601 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 600 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.013G110800 [exp] 595 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.005G239400 [exp] 591 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10043375 pacid=23167919 polypeptide=Lus10043375 locus=Lus10043375.g ID=Lus10043375.BGIv1.0 annot-version=v1.0 ATGGCTAGTGCTGAAGCGATTTTCCGAACTGGGTTGCTGCTGCGGCCTCATCTTTTTGACCCCTCGCGTAATTTTTCAAGCTCATTCCTTTTTCTCAAGT CTGGTGTTAGCAGTTCCAGAAAAAGTAGGAGAAATCATGACTCCAAAACCTCGGCGAAACGCATTAACCTCCATGCACGCTGTGGAATGGATCCCTTTTC TTTTGGGAGGATGGAATCCGCAGGAAGAGTCAATAAGACCCGATGCAGATGCCAAAAGGCAGAAGCTTTTGGTGTACAGAATGTTCAGGATTATGCACTG CTTGATCATTTGAAACCCGAAAATGGGGACGCTGCAAACGGTGCTGCGGTCGATGGAAACGGAGTAACGAAAGATGGAAGACCGAAGAAGGTTTCTTCAA ATCCCATTGAAGATGAAGCATGGGACTTGCTGCGTGCTTCTGTTGTGTACTATTGTGGCAACCCAATTGGAACCATTGCTGCTAATGATCCAAACAGCAG CAGTGTTCTCAATTATGATCAAGTCTTCATTCGTGACTTCATTCCTTCTGGCATTGCGTTCCTTTTGAAAGGAGAGTATGATATCGTCCGCAACTTCATT CTCTACACTTTACAATTACAGAGTTGGGAGAAGACCATGGATTGTTATAGTCCTGGTCAAGGCCTCATGCCTGCTAGTTTCAAGGTCCGAACTGTGCCTC TAGAAGGCGATGAGGACGCCAGTGAAGAAGTCTTGGATCCAGATTTTGGTGAAGCAGCAATTGGACGTGTTGCACCAGTTGACTCGGGACTGTGGTGGAT TATCCTCTTGAGAGCTTATGGAAAATGCTCCGGGGATCTCTCAGTGCAAGAGAGAGTTGATGTCCAAACTGGAATCAAAATGATTTTAAAACTGTGTCTT GCTGACGGCTTTGATATGTTTCCGACTTTGTTGGTCACTGATGGCTCTTGTATGATTGATCGACGCATGGGAATTCATGGGCATCCGTTGGAGATTCAGG CCCTCTTTTATTCAGCTCTACTAAGCGCACGTGAGATGCTTGCTCCCGAGGATGGAACAGCTGATCTGATCAGGGTCCTCAACAACCGTCTAGTTGCGTT GTCTTTCCACATCAGAGAATATTATTGGATCGACATGAAAAAACTGAACGAGATATACCGTTACAAGACAGAGGAGTACTCTTACGATGCCGTCAACAAG TTTAACATATACCCAGATCAGATTCCTCCATGGTTGGTGGAATTTATGCCCAACAAAGGAGGCTATTTGATTGGAAACCTGCAGCCCGCTCATATGGACT TCCGTTTCTTTTCACTGGGGAACTTGTGGTCCATAGTAAGTAGTCTTGCGACCATGGACCAGTCTCATGCCATATTGGATCTATATGAAGCAAAATGGAA CGATTTAGTTGCGGAGATGCCATTCAAAATATGCTACCCGGCTATCGAAGAACAGGAATGGCGGATTATTACAGGCAGCGACCCAAAGAACACACCGTGG TCTTACCATAATGGTGGTTCTTGGCCAACTTTGCTTTGGCAGCTGACTGTGGCATGCATCAAGATGAACAGACCAGAGATTGCACAAAGAGCAGTTGAGC TTGTTGAGAAGAGGATTTCGAGAGACAACTGGCCGGAATATTACGATACCAAGAGAGGGAGATTCATTGGCAAGCAATCGAGGCTGTTCCAAACGTGGAC GATTGCGGGCTATTTGGTGTCAAAGCTCCTGCTTGACAACCCAGATAAAGCAAAGATCCTGATTAATGAAGAGGATTCGGAGCTTGTAAATGCATTCTCG TGCATGATCGGTGCCAACCCGAGGAGACAACGTGGAAAGAAAGCAGTTAAACAGCCTTTCATTGTATGA
AA sequence Show only first row Show all	>Lus10043375 pacid=23167919 polypeptide=Lus10043375 locus=Lus10043375.g ID=Lus10043375.BGIv1.0 annot-version=v1.0 MASAEAIFRTGLLLRPHLFDPSRNFSSSFLFLKSGVSSSRKSRRNHDSKTSAKRINLHARCGMDPFSFGRMESAGRVNKTRCRCQKAEAFGVQNVQDYAL LDHLKPENGDAANGAAVDGNGVTKDGRPKKVSSNPIEDEAWDLLRASVVYYCGNPIGTIAANDPNSSSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFI LYTLQLQSWEKTMDCYSPGQGLMPASFKVRTVPLEGDEDASEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILKLCL ADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLSAREMLAPEDGTADLIRVLNNRLVALSFHIREYYWIDMKKLNEIYRYKTEEYSYDAVNK FNIYPDQIPPWLVEFMPNKGGYLIGNLQPAHMDFRFFSLGNLWSIVSSLATMDQSHAILDLYEAKWNDLVAEMPFKICYPAIEEQEWRIITGSDPKNTPW SYHNGGSWPTLLWQLTVACIKMNRPEIAQRAVELVEKRISRDNWPEYYDTKRGRFIGKQSRLFQTWTIAGYLVSKLLLDNPDKAKILINEEDSELVNAFS CMIGANPRRQRGKKAVKQPFIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	0	1
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	2.4	0.8716
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031793 [exp]	8.7	0.8300
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	14.1	0.8466
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	14.2	0.8415
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	18.7	0.8290
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	25.0	0.8352
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	25.5	0.7857
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	31.6	0.8015
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	32.0	0.7993
AT3G62010			unknown protein		Lus10009251 [exp]	36.2	0.7958

Compare expression of checked genes

Lus10043375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.