Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44620 254 / 8e-87 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019533 [exp] 364 / 3e-128 AT3G44620 262 / 6e-87 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186400 [exp] 290 / 1e-100 AT3G44620 287 / 2e-98 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Potri.009G146800 [exp] 288 / 6e-100 AT3G44620 281 / 4e-96 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF01451 [flax] [poplar] LMWPc Low molecular weight phosphotyrosine protein phosphatase
Representative CDS sequence Show only first row Show all	>Lus10043376 pacid=23167911 polypeptide=Lus10043376 locus=Lus10043376.g ID=Lus10043376.BGIv1.0 annot-version=v1.0 ATGGCGGACGCCGATACCACCACCAAATCCTTCTCCGTTCTCTTCGTCTGCCTCGGCAACATCTGCAGGAGCCCAGCTGCGGAAGCCGTGTTCAGGGATA TTGTTCAGGACAAGGGATATGGTTCCAAGTTCAACATCGACTCTGCCGGCACCATCAATTACCATGAGGGCAATCCGGCTGATGGAAGAATGAGAGGTGC TGCTAAGAAGCGAGGGATCCTGATAACATCCATTTCCAGGCCAATTCGACCTTCTGACTTCATCGACTTCGATATCATCCTTGCTATGGACAGGCAGAAT AGAGAGGATATATTGGGTGCTTTGGAGAGGTGGAAGTTCAAGGAAACGCTCCCTGAGGATGCACATAACAAGGTTAAGTTGATGTGTTCCTACTGTAAGA AGCATGAGGAGAGTGAAGTCCCCGATCCTTACTATGGTGGACACCAAGGTTTTGAAAAGGTTCTGGATATTCTTGAAGATGCCTGTGAATCATTGCTGGA CGGCATCTTGGCTGAGAACAGTCATATTTGCAGTTCGTGA
AA sequence Show only first row Show all	>Lus10043376 pacid=23167911 polypeptide=Lus10043376 locus=Lus10043376.g ID=Lus10043376.BGIv1.0 annot-version=v1.0 MADADTTTKSFSVLFVCLGNICRSPAAEAVFRDIVQDKGYGSKFNIDSAGTINYHEGNPADGRMRGAAKKRGILITSISRPIRPSDFIDFDIILAMDRQN REDILGALERWKFKETLPEDAHNKVKLMCSYCKKHEESEVPDPYYGGHQGFEKVLDILEDACESLLDGILAENSHICSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44620			protein tyrosine phosphatases;...		Lus10043376 [exp]	0	1
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	10.7	0.8074
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10004623 [exp]	12.7	0.7975
AT3G54200			Late embryogenesis abundant (L...		Lus10035612 [exp]	14.1	0.8027
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	24.6	0.7935
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	25.5	0.7884
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	28.6	0.7740
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	29.5	0.7913
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	31.9	0.7063
AT5G26620			unknown protein		Lus10001512 [exp]	36.5	0.7704
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	37.1	0.7917

Compare expression of checked genes

Lus10043376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.