Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27710 88 / 7e-23 60S acidic ribosomal protein family (.1.2.3.4) AT2G27720 85 / 1e-21 60S acidic ribosomal protein family (.1.2.3) AT3G44590 83 / 7e-21 60S acidic ribosomal protein family (.1.2) AT3G28500 79 / 2e-19 60S acidic ribosomal protein family (.1) AT5G40040 75 / 1e-17 60S acidic ribosomal protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019533 [exp] 125 / 9e-35 AT3G44620 262 / 6e-87 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Lus10006270 [exp] 114 / 1e-31 AT2G27710 100 / 9e-27 60S acidic ribosomal protein family (.1.2.3.4) Lus10020575 [exp] 110 / 2e-31 AT3G44590 100 / 9e-29 60S acidic ribosomal protein family (.1.2) Lus10026714 [exp] 102 / 1e-28 AT3G44590 96 / 6e-27 60S acidic ribosomal protein family (.1.2) Lus10019846 [exp] 102 / 2e-28 AT2G27710 92 / 2e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10014070 [exp] 102 / 2e-28 AT2G27710 92 / 1e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10026712 [exp] 103 / 2e-27 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146200 [exp] 103 / 9e-29 AT2G27710 89 / 2e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.004G185800 [exp] 102 / 2e-28 AT2G27710 89 / 4e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.010G236400 [exp] 89 / 2e-23 AT2G27710 90 / 1e-24 60S acidic ribosomal protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10043377 pacid=23167990 polypeptide=Lus10043377 locus=Lus10043377.g ID=Lus10043377.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTCGCAGCTTACTTGCTCGCCGTTCTGGGAGGCAACACCACCCCCACCGCCGATGACTTGAAGAGTATCCTCGGATGCGTTGGTGCCGAGG CTGATGACGATAGGATTGAGTTGCTATTGTCTCAAGTGAAAGGAAGAGACACCACCGAGCTGATAGCAGCCGGTATGGAGAAGTTGGCCTCTGTGCCTTC AGGAGGTGGTGGTGTTGCAGTTGCTGCATCAGCTGCCCCTGCTGCCGGTGGTGCTGCTGCACCAGCTGCCGAGGCAAAGAAGGAAGAGAAAGTGGAGGAG AAGGAGGAGTCTGATGATGTAAAGTTCTGCCCACATTGTTGTTGTTTATGCTTAAGTCGTTTATTAAGTTGTAGTTGTTTAGTTCCTTCAAATCTTCTGA TCTGTGTTGGTTTTGCTTCTTCCTGCAGGATATGGGTTTCAGCCTTTTCGATTAAACCACCTCAGTCTAGCTCTTTGTTATTCTACCTTGAAGACGTCTG TTCGTTTCATCGTTTGCTTAGTTTTTTTTAG
AA sequence Show only first row Show all	>Lus10043377 pacid=23167990 polypeptide=Lus10043377 locus=Lus10043377.g ID=Lus10043377.BGIv1.0 annot-version=v1.0 MKVVAAYLLAVLGGNTTPTADDLKSILGCVGAEADDDRIELLLSQVKGRDTTELIAAGMEKLASVPSGGGGVAVAASAAPAAGGAAAPAAEAKKEEKVEE KEESDDVKFCPHCCCLCLSRLLSCSCLVPSNLLICVGFASSCRIWVSAFSIKPPQSSSLLFYLEDVCSFHRLLSFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	0	1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	2.4	0.9053
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	4.2	0.8924
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	4.9	0.8967
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	6.0	0.8895
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	8.1	0.8797
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	12.4	0.8656
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	13.3	0.8709
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	15.2	0.8629
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10004871 [exp]	15.5	0.8574
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	16.0	0.8680

Compare expression of checked genes

Lus10043377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.