Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27690 341 / 1e-115 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT5G63450 253 / 5e-81 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 243 / 3e-77 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT3G56630 240 / 3e-76 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 238 / 2e-75 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G24540 234 / 1e-73 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT5G23190 233 / 1e-72 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 225 / 2e-70 Cytochrome P450 superfamily protein (.1) AT3G01900 220 / 2e-68 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT1G13140 216 / 1e-66 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019534 [exp] 310 / 4e-108 AT2G27690 208 / 4e-66 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10033853 [exp] 251 / 3e-80 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 247 / 1e-78 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 246 / 2e-78 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 230 / 9e-72 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10017394 [exp] 231 / 1e-71 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 229 / 2e-71 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10010193 [exp] 228 / 6e-71 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10012531 [exp] 226 / 2e-70 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145400 [exp] 346 / 2e-117 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 331 / 8e-112 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 325 / 4e-109 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.013G075600 [exp] 316 / 1e-105 AT2G27690 585 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.016G031700 [exp] 255 / 7e-82 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.002G042200 [exp] 253 / 7e-81 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220900 [exp] 251 / 2e-80 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 249 / 1e-79 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 247 / 1e-78 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 245 / 7e-78 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043378 pacid=23168431 polypeptide=Lus10043378 locus=Lus10043378.g ID=Lus10043378.BGIv1.0 annot-version=v1.0 ATGCCGCCCCCCCCGGCTGTGTGGAAAACGAAACGGTTTCTCCGGCTGGGATCGGAGAGGCGGCTTAAGAAGGCGGTTCAGATGGTGAACCGTGTGGCGC AGGAAGTTATAAACCAGCGTCGGAAGATAGGGGTCTCCGGGAAGAGCGACCTTCTCTCTCGATTCATGGCCGCCGGAGTTGTCGGAGAAGAAGGAAAAAA CAACAGCGACGACTACCTCCGGGACATAGTGAAGAGCTTTATGTTAGCAGGAAGGGACACCGTGGCGTCCGGACTCACCAGCTTCTTCTGGCTGATGTCA CGCCACCCGGAGGTGGAGGCGGCGATACGGTCGGAGGCAGAAAATTTGTCGTCGGCGGCAGGAAAAAACGACAGCAAGGCCTCGCCGTTTGATAAAATGA GGGAAATGCATTACCTGACAGCCGCCATGTATGAGAGTCTGCGGCTGTTTCCACCGGTACAGTTCGATTCCAAGTTCGCGTTAAACGACGACGTATTGCC GGACGGGACGGTGGTGAGAAAGGGGGACAGGGTGACGTACCACCCATACGCGATGGGGAGGATGGAGTCGATATGGGGAGCGGACTGCATGGAGTTCAGA CCGGAGAGGTGGCTGAACGAGGAAGGCAAGTTTGTCGGGAGGAGCCAGTTCGAGTACCCAGTTTTCCAGGGTGGTCACAGGGTTTGTTTGGGGAAAGAGA TGGCGATTGTGGAGATGAAGAGCGTTATTCTGGCGGTGGTTACTCGGTTCAATGTCCGGGTGGTGGATCCGGGTCAGGAACAGATGTTTTCTCCCGGTTT GACTGCTACTGTCAGGGGAGGCCTGCATGTTGTCGTTGAGAGGAGAGAATGA
AA sequence Show only first row Show all	>Lus10043378 pacid=23168431 polypeptide=Lus10043378 locus=Lus10043378.g ID=Lus10043378.BGIv1.0 annot-version=v1.0 MPPPPAVWKTKRFLRLGSERRLKKAVQMVNRVAQEVINQRRKIGVSGKSDLLSRFMAAGVVGEEGKNNSDDYLRDIVKSFMLAGRDTVASGLTSFFWLMS RHPEVEAAIRSEAENLSSAAGKNDSKASPFDKMREMHYLTAAMYESLRLFPPVQFDSKFALNDDVLPDGTVVRKGDRVTYHPYAMGRMESIWGADCMEFR PERWLNEEGKFVGRSQFEYPVFQGGHRVCLGKEMAIVEMKSVILAVVTRFNVRVVDPGQEQMFSPGLTATVRGGLHVVVERRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	0	1
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	2.0	0.9113
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	4.4	0.9158
					Lus10020461 [exp]	5.5	0.8888
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	6.2	0.8510
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	6.9	0.8411
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	7.9	0.8714
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	9.0	0.9084
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	9.6	0.9074
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10024020 [exp]	12.0	0.8026
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	15.0	0.8133

Compare expression of checked genes

Lus10043378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.