Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16650 341 / 3e-114 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 334 / 5e-111 PRORP3 proteinaceous RNase P 3 (.1) AT2G32230 246 / 3e-77 PRORP1 proteinaceous RNase P 1 (.1) AT5G60430 117 / 3e-32 drug transmembrane transporters;antiporters (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019535 [exp] 620 / 0 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10038817 [exp] 247 / 3e-78 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10039049 [exp] 241 / 5e-75 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 231 / 2e-71 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 236 / 4e-71 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 155 / 4e-43 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145200 [exp] 390 / 5e-133 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 367 / 3e-124 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.017G144900 [exp] 265 / 3e-84 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G074100 [exp] 260 / 2e-82 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 238 / 2e-71 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF11977 [flax] [poplar] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Lus10043379 pacid=23168224 polypeptide=Lus10043379 locus=Lus10043379.g ID=Lus10043379.BGIv1.0 annot-version=v1.0 ATGGCTAGGAATGGAGGAGGGTGGCATGGGTTGGGATGGATTGGGAAAGGTGGATGGATTGTCAATAAAGGGAAAGTTAGTGATGATGGGAAGTGTTTCT GTTGTGGTGAGCAGTTAGCTTGTGTTGATATTGCTGGTGAAGAGACTGAGAGGTTTGCTGAATCGGTGGCTGGTTTGGCTATGGATAGAGAGGTCAAGGC TAATTTCAGTGAATTTCAGGATTGGCTGGAGAAGCATCAAGCTAATTATGATGCTATAGTAGATGCAGCGAATGTGGGTCTTTACCAGCAGAATTTTGTG GAAGGGGGATTCAGTGTCTCGCAGGTTGTGAATTTTAGCCAAGGAAAGCAGCTTCATGCTGTAGTGACAGAATTATATAATAGAAGTGGGAAGAAATGGC CCCTTATAGTATTGCATAGCAAGCGTGTTCGAGCTCTCCTTGAAAATGCTTCCCACAGAAAGTTCGTTGAAGAGTGGAAAGAGAACGGTGCTCTATATAC CACCCCACATGGTTCTAATGATGATTGGTATTGGCTATACGCTGCTGTCAAACTCAGGTGCTTGCTAGTTACGAATGATGAAATGCGAGATCACATTTTT GAACTCCTAGGAACCAGCTTCTTCCTCAAATGGAAAGAAAGGCATCAAGCGAAGTATACTTTTGCAAAGGGTAAATTGATTCTTCAAATGCCAGCCCCAT TTTCTATGGTCATCCAGGAATCAGAGAAAGGATCATGGCATGTACCTATAGCAGGCAATGAGAGTTGCGAGTCTGCACAAAGTTGGCTCTGCATAACACG GACGGGTTCTGCAGACAAAACTTGCAACGAACCTGTAACCATGGAAGCTACTGAAAATGGCCATGATAAGTGCTGCAGTGGGGGAGTTTCGAGATCAGAA AGCGCCCGAACCAGTGAAGTTGGTGACGATAAGACCGCCGCAGCCATAACGGGGAAAAGGAAAGAGAGGTCTTAA
AA sequence Show only first row Show all	>Lus10043379 pacid=23168224 polypeptide=Lus10043379 locus=Lus10043379.g ID=Lus10043379.BGIv1.0 annot-version=v1.0 MARNGGGWHGLGWIGKGGWIVNKGKVSDDGKCFCCGEQLACVDIAGEETERFAESVAGLAMDREVKANFSEFQDWLEKHQANYDAIVDAANVGLYQQNFV EGGFSVSQVVNFSQGKQLHAVVTELYNRSGKKWPLIVLHSKRVRALLENASHRKFVEEWKENGALYTTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIF ELLGTSFFLKWKERHQAKYTFAKGKLILQMPAPFSMVIQESEKGSWHVPIAGNESCESAQSWLCITRTGSADKTCNEPVTMEATENGHDKCCSGGVSRSE SARTSEVGDDKTAAAITGKRKERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	5.0	0.9004
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	5.8	0.8982
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10034669 [exp]	6.9	0.8695
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	11.7	0.8866
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	11.7	0.8443
AT4G37190			unknown protein		Lus10001001 [exp]	17.4	0.8624
					Lus10011266 [exp]	25.2	0.8735
					Lus10018952 [exp]	25.5	0.8342
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	25.7	0.8802
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	28.4	0.8542

Compare expression of checked genes

Lus10043379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.