Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24625 53 / 3e-08 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G25160 50 / 3e-07 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G01860 49 / 9e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G10970 49 / 9e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G57520 47 / 1e-06 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G80730 47 / 3e-06 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G68360 46 / 1e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G66140 46 / 1e-05 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G67030 45 / 1e-05 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G61470 44 / 5e-05 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019536 [exp] 222 / 2e-72 AT1G80730 52 / 5e-08 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10026121 [exp] 51 / 4e-07 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10008698 [exp] 50 / 5e-07 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10025471 [exp] 49 / 5e-07 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10006960 [exp] 48 / 1e-06 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10017125 [exp] 48 / 2e-06 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014350 [exp] 47 / 4e-06 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10013243 [exp] 47 / 5e-06 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 47 / 5e-06 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021400 [exp] 60 / 3e-10 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123800 [exp] 56 / 1e-08 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.003G192000 [exp] 55 / 2e-08 AT5G25160 82 / 4e-18 zinc finger protein 3 (.1) Potri.016G028100 [exp] 52 / 7e-08 AT5G10970 78 / 2e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123900 [exp] 52 / 1e-07 AT5G25160 88 / 2e-20 zinc finger protein 3 (.1) Potri.008G138000 [exp] 52 / 1e-07 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.006G261700 [exp] 52 / 1e-07 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G169800 [exp] 51 / 1e-07 AT5G57520 94 / 7e-25 zinc finger protein 2 (.1) Potri.003G180600 [exp] 51 / 2e-07 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G134800 [exp] 50 / 4e-07 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043380 pacid=23168144 polypeptide=Lus10043380 locus=Lus10043380.g ID=Lus10043380.BGIv1.0 annot-version=v1.0 ATGTCAATGAATCGACAAATTCAATTCCAAGAAGCTTATATTCGTCATGAATATGATCTTTCAGTCATCCATTCCTTTGTCCGGTCAGTTCAGCCACCGA ATCGCCATCCAGTCGGCCTAAATCTGGCGAATCCCAATGGTGTCGCCAACACTCAACCTCCCAATTTGGAGCTCAACTTGATGAGGGGCTACCGTGAAAT CAACAACGGTGTGCCTCATATCCCTACCGTTCCAAACAGGCGCACATTTGCTTGCAACTTCTGCACCAAACAGTTCGGAAACGGTCAAGCCTTGGGTGGG CACCAAAGGGCCCACACACTAGAACGGGCGTTTCATAATTGGCAGCTGATCAGGTTGAACCGGTTTGGTAGCCGCCATGGTTACGGTGTCCCAAGGAATC CCTTGGGTGTCAATGCTCTTTCTTCAATGATCCATAAGCCCGTTGGATCTGTTGGTGGTGCTGTTGGATACAGGGCTCCAATGATCCATGGGCCCGTTGG ATCTGTTGGATTGGCTGTTGGGGCTGTTGGATACAGGGGTTCAATGATCCACAGGCCCGTTGGACCTGTTGGTGGTGCTGTTGGATACAGGGCTTCAATG ATGCATAGGCCCGTTGGATCTGTAGTTGGTGCTGTTGGATACAGGGCTCGTGGATTTGAAAGATCGTTTCCCGTAATGCCTGGCCCAATTCCGAGGCCTT GGGCTTATTCTCGGTTGAGGAATCCTATGAATAACAATGGTGCTAGTTCGTCATCTAAGCAAGAGATCGTCGATTTGATGGCGCATGATGGAACTGATGG AACACCACCGCCGCCGGCAACCGAATGA
AA sequence Show only first row Show all	>Lus10043380 pacid=23168144 polypeptide=Lus10043380 locus=Lus10043380.g ID=Lus10043380.BGIv1.0 annot-version=v1.0 MSMNRQIQFQEAYIRHEYDLSVIHSFVRSVQPPNRHPVGLNLANPNGVANTQPPNLELNLMRGYREINNGVPHIPTVPNRRTFACNFCTKQFGNGQALGG HQRAHTLERAFHNWQLIRLNRFGSRHGYGVPRNPLGVNALSSMIHKPVGSVGGAVGYRAPMIHGPVGSVGLAVGAVGYRGSMIHRPVGPVGGAVGYRASM MHRPVGSVVGAVGYRARGFERSFPVMPGPIPRPWAYSRLRNPMNNNGASSSSKQEIVDLMAHDGTDGTPPPPATE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10043380 [exp]	0	1
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	1.4	0.8021
AT3G51520			diacylglycerol acyltransferase...		Lus10039136 [exp]	8.7	0.6724
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10008858 [exp]	10.2	0.7583
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	14.8	0.6604
					Lus10004853 [exp]	22.8	0.6007
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	24.1	0.6007
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	25.2	0.6173
					Lus10040407 [exp]	25.3	0.6007
					Lus10027667 [exp]	26.4	0.6007
					Lus10020530 [exp]	27.5	0.5783

Compare expression of checked genes

Lus10043380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.