Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) AT3G48820 50 / 4e-07 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08660 49 / 1e-06 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019538 [exp] 427 / 1e-151 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10031992 [exp] 53 / 6e-08 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 52 / 9e-08 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10032547 [exp] 52 / 1e-07 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10043193 [exp] 51 / 2e-07 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184200 [exp] 278 / 9e-93 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.009G144000 [exp] 218 / 1e-69 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.014G145400 [exp] 52 / 2e-07 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.015G104100 [exp] 50 / 7e-07 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [flax] [poplar] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10043382 pacid=23167962 polypeptide=Lus10043382 locus=Lus10043382.g ID=Lus10043382.BGIv1.0 annot-version=v1.0 ATGAAAAGGTCGGTGCGTCCTGTCTTTACTATTCTTCTCTTCGTTCTCTTTGCTCTTACTCTCAGCTGCCGAATTCTGATCCGCCGGACCTTGTTCGCCT CCCTCGACCTGCACAACGATGTAATTTTCAATTCCAAAAATGCCCCCGCTACCATCAACTCCACGCTGTTGAGATACGCCGCCGTCGATTTAAGCGAGTC CAAGACTAAGCAAGAGATTGAGCAGTTGTTGGAGGGCAATTTCGCCAGTCGTGGCAGGTACAGGACCTTCACTACTTGGAGGAGGTTCAGTAGCCATGAC CCCCAGGCTAGGTCGTCTCGCGGCATTCCTGTAATGCTCAGATCTCCTGAATTCTACCGCTACTGGCTCAAATTCCGCCAGGTCTTGCATTATTGGGCTC GGAACCGGAGGTATCAGCCCGAGGTGATGAACGACTTGGTGGAGCTTGTCAAGATTCCGATTCAGAAGCAGAAAGGATCGGCCTCCGCTGGTTCTAAACG GTATGCTTCTTGTGCAGTGGTCGGGAACAGTGGGATCTTGCTGCAGAAAGAGTACGGGAAGCTTATCGATAGCCACAAGATGGTGATACGATTGAACAAT GCCAATATCGACCAATTCGAGAAGAATGTCGGGTCGAAAACCCATAAAACAGTACATTCTCGGTTTATTGGTTATTTTCGGTTGCGGTTGATTGCAGTTC ACCCCATTAATCGATAA
AA sequence Show only first row Show all	>Lus10043382 pacid=23167962 polypeptide=Lus10043382 locus=Lus10043382.g ID=Lus10043382.BGIv1.0 annot-version=v1.0 MKRSVRPVFTILLFVLFALTLSCRILIRRTLFASLDLHNDVIFNSKNAPATINSTLLRYAAVDLSESKTKQEIEQLLEGNFASRGRYRTFTTWRRFSSHD PQARSSRGIPVMLRSPEFYRYWLKFRQVLHYWARNRRYQPEVMNDLVELVKIPIQKQKGSASAGSKRYASCAVVGNSGILLQKEYGKLIDSHKMVIRLNN ANIDQFEKNVGSKTHKTVHSRFIGYFRLRLIAVHPINR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	0	1
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	1.4	0.9291
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	2.6	0.9068
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	3.0	0.9183
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	4.2	0.9250
AT5G57460			unknown protein		Lus10028963 [exp]	6.0	0.9183
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	7.5	0.8985
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	8.7	0.9125
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	11.0	0.9093
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030819 [exp]	13.8	0.8782
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	14.1	0.8984

Compare expression of checked genes

Lus10043382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.