Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22470 1024 / 0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) AT2G31320 366 / 2e-112 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT4G02390 144 / 1e-35 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019539 [exp] 1234 / 0 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10033871 [exp] 340 / 6e-102 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10007882 [exp] 134 / 1e-32 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10030363 [exp] 108 / 2e-24 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143900 [exp] 1151 / 0 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.004G184100 [exp] 471 / 6e-159 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.002G041300 [exp] 338 / 7e-102 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.014G128200 [exp] 154 / 7e-39 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 107 / 1e-23 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0084 [flax] [poplar] ADP-ribosyl PF00644 [flax] [poplar] PARP Poly(ADP-ribose) polymerase catalytic domain CL0306 [flax] [poplar] HeH PF08063 [flax] [poplar] PADR1 PADR1 (NUC008) domain CL0306 [flax] [poplar] PF02877 [flax] [poplar] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0306 [flax] [poplar] PF05406 [flax] [poplar] WGR WGR domain
Representative CDS sequence Show only first row Show all	>Lus10043383 pacid=23168107 polypeptide=Lus10043383 locus=Lus10043383.g ID=Lus10043383.BGIv1.0 annot-version=v1.0 ATGAAGGCCCACGACACAAGGTCACACCACCATCAGCATCATCATCATCACCAACCTTCTGAGCAAGAGACCAAGACCATCATGACCAGGAAGCAGAAAG CTGCTGCCGCCCATGAAGGCCAACAATCTCCCACTAAGAAGCACAAGAATGAAGCTGGCGGTAGCAGTGAGCATGATGATCGTGTCAATAAGAATGGGAG ATCTCAAGATTTGAGTAAGGAGTTCGAGGAATACTGTAACGACGTCAGGGAGCATCTCTCCATTGCTCAGATGAGGGAAATCCTCGAGTTGAATGACCAG GACCCCTCTGGCTCCGAAGGTGTCGTTATCACCAAATGCCAGGACTTATTATTCTTCGGGCCGCTGGAAAGATGTCCGTTATGCTGCGGGAATTTGGAGT TCAACGGGAAGATATACGGCTGTACTGGGTTTTACAGCGAATGGTCGAGCTGCACTTTCAAATCCAAGAATCCTCCAAGGAAACAGGATCCCACTCAATT GCCTGATTCTGTTCTCAACTCCTCCATCTCTGACATGCTGAAGAAGTATCAGGATTCAAGCAGGCGGCCTAGCAGGGATTCAGCAAACCCTTTGAAGCCT TTGTCAGGAATGGTCATAGCTTTGTCAGGCCGTCTCTCAAGGACCCATCAAGAATGGAGGAAATTGATCGAGCAAAATGGAGGCAAAGTCTCTAATTCTG TCATGGGAGTTAGCTGCCTTGTTGCGACATCTGCAGAGCGAGATCGTGGTGGCTCTTCGAAGCATGCTGAAGCAGTTGAGCGCGGGATTCGAGTGGTGAG GGAGGAATGGTTGGTGGATTGCATTGAGAATCAAGAGCCTCAGCCATTGGCAGCATACGACATCATGACCGACATTGCTGTGGACGGCAAAGGCATTCCA AGGGACAAACAGGATCCTAGCGATCAAGCTCTGGACGCCCTCACGGCCGAACTGAAGCTTTACGGGAAGAGAGGAGTCCACAAGGACACCAAGCTTCTGG ATCAAGGGGCAGCTATTCTTGAGAAAGATGGGATCTTGTACAACTGTGCTTTCTTCCTCTGTGATCTCGGCAGGGGAATTAACGAGTTCTGTATTATGCA ACTGATCACTGTTGAAGATGGTAACTTGCACATGTACTACAAGAAAGGGAAGGTTGGAGATGATCCGAATGCGGAAGAGAGGCTGGAAGAGTGGGATAGC GTGGATAGTGCTATTAAGGAGTTTGTGAATTTGTTCGAGGAGATCACTGGCAACGAGTTTGAGCCTTGGGAGAGGGAAAAGAAGTTTGAGAAGAAGAGGC TTAGCTTCTTCCCCATCGATATGGATGATGGAGTTGATGTGAGACGTGGAGGATTGGAGTTGAGGCAACTGGGAGCTGCAAGTCTACACAGCAGCCTTGA ACCAAAGGTTGCAAATTTCATGAAGTCCTTGTGTAGTCAGGAAATCTACTGGTATGCACTGATGGAGATGGATATGGACTCTCCAGACTTGCCGATCGGA ATGCTCTCTGACATCCATCTCAAAAGAGGCGAGGAAGCTCTTCTTCAATTTGTCGAGGCTGTCAAATCAGCCGAAGGAGCGAAAGGGCTGGGGAGAAACG AGGCGGCTGTCTGGTCTGACCATAGCCAGCGGTGGTTCACGCTTATGCCTTCGACGAGGCCCTTTGTCTTCAAGGACTATAAATCACTTGCAGATAATGC TGCAGCTAGTTACGAGACTATACGGGACATCAATGTGGCATCACGCATTATAGGAGACATGTCCGGTGCGACCCTTGATGACCCTTTGTCGGACAGGTAC AAGAAGTTGGGGTGCAGCATTTCCGTGCTGGACAAAGATTCCGATGATTACAAGATGATCGTCAAGTACCTGGAAACGACATATGAGCCCGTCAAAGTTG CAGACATAGTGAGCCATCCTGTTGAGATCGAACAAGAATACGGAGTCAGAGTCGAGAACATATTTGCTGTGCAGTCTAGTGCAAGCCCGTCGTTAGAGGA TATGAAGAACTTGCCAAATAAAGTCCTGCTGTGGTGTGGATCACGGACGTCAAATATGTTAAGGCATTTGCAGAAAGGGTTCTTGCCGGCGGCATGTTCC CTTCCTGTTCCGGGCTACATGTTTGGAAGAGGGATAGTTTGTTCCGATGCGGCAGCAGAAGCAGCGAGATACGGTTTTACGGCAGTGGATAGGCCAGAGG GGTTCTTGGTTCTGGCAGTGGCCTCTCTGGGCGATCAGATCATGGAGTTCAAGACCCCACCTGAGGGCACTAAGAGTCTGGAAGAGAAGAAAGTAGGGGT GAAGGGATTGGGAAGGAAGAAGACGGATGAAGCAGAGCATTTCACATGGAGAGACGGGATAAAGGTGCCATGTGGGAAGCTGGTGGCATCGGAGCACAAA GATAGCGTCCTGGAATACAATGAATATGCAGTCTATGATCCCAAGATGACGAGCATAAGGTTCTTGGTGGCAGTGAAATACGAGGAGCAGAATGCAGAGG TAGACGAGGCAGAGCCATGA
AA sequence Show only first row Show all	>Lus10043383 pacid=23168107 polypeptide=Lus10043383 locus=Lus10043383.g ID=Lus10043383.BGIv1.0 annot-version=v1.0 MKAHDTRSHHHQHHHHHQPSEQETKTIMTRKQKAAAAHEGQQSPTKKHKNEAGGSSEHDDRVNKNGRSQDLSKEFEEYCNDVREHLSIAQMREILELNDQ DPSGSEGVVITKCQDLLFFGPLERCPLCCGNLEFNGKIYGCTGFYSEWSSCTFKSKNPPRKQDPTQLPDSVLNSSISDMLKKYQDSSRRPSRDSANPLKP LSGMVIALSGRLSRTHQEWRKLIEQNGGKVSNSVMGVSCLVATSAERDRGGSSKHAEAVERGIRVVREEWLVDCIENQEPQPLAAYDIMTDIAVDGKGIP RDKQDPSDQALDALTAELKLYGKRGVHKDTKLLDQGAAILEKDGILYNCAFFLCDLGRGINEFCIMQLITVEDGNLHMYYKKGKVGDDPNAEERLEEWDS VDSAIKEFVNLFEEITGNEFEPWEREKKFEKKRLSFFPIDMDDGVDVRRGGLELRQLGAASLHSSLEPKVANFMKSLCSQEIYWYALMEMDMDSPDLPIG MLSDIHLKRGEEALLQFVEAVKSAEGAKGLGRNEAAVWSDHSQRWFTLMPSTRPFVFKDYKSLADNAAASYETIRDINVASRIIGDMSGATLDDPLSDRY KKLGCSISVLDKDSDDYKMIVKYLETTYEPVKVADIVSHPVEIEQEYGVRVENIFAVQSSASPSLEDMKNLPNKVLLWCGSRTSNMLRHLQKGFLPAACS LPVPGYMFGRGIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGDQIMEFKTPPEGTKSLEEKKVGVKGLGRKKTDEAEHFTWRDGIKVPCGKLVASEHK DSVLEYNEYAVYDPKMTSIRFLVAVKYEEQNAEVDEAEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	0	1
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	4.7	0.7507
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	8.3	0.7548
AT1G58025			DNA-binding bromodomain-contai...		Lus10036580 [exp]	9.2	0.6520
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	14.8	0.7123
					Lus10024749 [exp]	43.5	0.6494
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	61.5	0.6734
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021542 [exp]	68.9	0.6704
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10034611 [exp]	209.3	0.5835
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	243.3	0.5862

Compare expression of checked genes

Lus10043383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.