Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44460 75 / 2e-15 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56850 60 / 3e-10 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT4G34000 60 / 4e-10 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G49720 53 / 9e-08 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT2G36270 50 / 7e-07 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G45249 50 / 1e-06 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G41070 48 / 3e-06 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT5G42910 42 / 0.0003 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019542 [exp] 254 / 3e-84 AT3G44460 107 / 2e-27 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 72 / 4e-14 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 68 / 9e-13 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 66 / 7e-12 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 59 / 1e-09 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 53 / 9e-08 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 52 / 1e-07 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10014066 [exp] 51 / 5e-07 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10008928 [exp] 49 / 7e-07 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164500 [exp] 89 / 5e-20 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G083000 [exp] 79 / 1e-16 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G018500 [exp] 73 / 7e-15 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 66 / 2e-12 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 55 / 1e-08 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 54 / 4e-08 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 53 / 7e-08 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 52 / 1e-07 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 51 / 3e-07 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 50 / 6e-07 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10043386 pacid=23168037 polypeptide=Lus10043386 locus=Lus10043386.g ID=Lus10043386.BGIv1.0 annot-version=v1.0 ATGATGAGTGCTGTTCCTAAAGACAAGTCTTTCTGGACTCTGACGCTGAATGAAATTGAACGCGAGAATGGGAGGAACTTAGGGTCCATGAACATGGATG ATTTTTTGACTCACTTGTTGAATATCAATAATCTTGATGACGAAAATCGTCAGGTTCAACAGCCTCAACTACCACATTACAACATTTATAATAATAATAG TGGTTATGATCTGCAGCTGCCCAGAAGACCCTTAATGGCCGGTGCTCCTCCATTACTGCAGCAGCAACAACCTTGTTTTCATATACCTTCCCCTTTCTGT AAGAAGACAGTGGGCGACGTGTGGTTCGAGATCCAGAGGGAGCAGAATCCGGCGAACAATGTTGCCGTTGTTCCTCCTCCCGAGAGGCAGCAGTCTTTAG GGGAAATGACGCTGGAGGATTTCCTGGTGCTAGCTGGTGTGGTTCGGAAGAAAGCAGAACTACAGCCAACATTAGATCAGGTGCAAATCGAAACAGTACC GTCGACGCCATTAGAAGAAGTAATGATCCCGGTAGAAAATGTTGCGCCCAAGGCTAGATGTTTCGCGGTGGAGAGAAGGCATCGCAGGATGATTAAGAAC AGAGAATCTGCTGCCAGATCCAGGGCTAGAAGACAGGCATACACATTAGAGTTGGAACTTGAGTTGGATTCTCTCAAGGAAGAGAATATTAGACTCAAGC AAACATTGGTATGCATTTATCTCTCTCTATATCATTCATGGTGCACGCTTCAGTACCCCGGATTAGAGGTACGGATACCTCCTTACGTGGCCGTCATATC GTTGATATCAGTAAGAAGGGTATTGAATTTCGATATCCCCATCGTGGTTGCCACCTAG
AA sequence Show only first row Show all	>Lus10043386 pacid=23168037 polypeptide=Lus10043386 locus=Lus10043386.g ID=Lus10043386.BGIv1.0 annot-version=v1.0 MMSAVPKDKSFWTLTLNEIERENGRNLGSMNMDDFLTHLLNINNLDDENRQVQQPQLPHYNIYNNNSGYDLQLPRRPLMAGAPPLLQQQQPCFHIPSPFC KKTVGDVWFEIQREQNPANNVAVVPPPERQQSLGEMTLEDFLVLAGVVRKKAELQPTLDQVQIETVPSTPLEEVMIPVENVAPKARCFAVERRHRRMIKN RESAARSRARRQAYTLELELELDSLKEENIRLKQTLVCIYLSLYHSWCTLQYPGLEVRIPPYVAVISLISVRRVLNFDIPIVVAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10043386 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	7.1	0.7293
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	15.3	0.7641
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	16.1	0.8116
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	18.6	0.7867
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	39.1	0.7531
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	79.0	0.6782
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	81.0	0.7119
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	81.1	0.7085
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	111.2	0.6766
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	123.5	0.6960

Compare expression of checked genes

Lus10043386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.