Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08320 459 / 3e-159 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 338 / 2e-114 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 337 / 1e-113 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 328 / 3e-110 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06839 320 / 1e-105 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 308 / 1e-101 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 305 / 1e-101 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G68640 310 / 2e-101 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G22070 289 / 4e-94 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G77920 283 / 3e-92 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019543 [exp] 715 / 0 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 473 / 8e-164 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10004876 [exp] 472 / 9e-164 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 352 / 1e-119 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 347 / 1e-117 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 347 / 1e-117 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10023822 [exp] 337 / 2e-111 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10009055 [exp] 303 / 7e-100 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10041475 [exp] 306 / 3e-99 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203400 [exp] 444 / 4e-153 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 439 / 4e-151 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G036500 [exp] 359 / 2e-120 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 356 / 4e-119 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G049200 [exp] 352 / 5e-117 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.001G029800 [exp] 347 / 2e-115 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 346 / 7e-115 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G058800 [exp] 345 / 2e-114 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.008G118300 [exp] 336 / 2e-111 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 311 / 3e-103 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10043387 pacid=23167936 polypeptide=Lus10043387 locus=Lus10043387.g ID=Lus10043387.BGIv1.0 annot-version=v1.0 ATGGAACAAAATAACAGTCACTCCGACGGCCCTGAATTTGATTTTGGGGAGCTGGAGGAGGCAATTTTTCTGCAAGGAGGAGTGAAGATTAGGAACGAAG AAAGACCACTGAGAGAAGGTGCAGATGCAGCAGCTGCTGCAGGGAAGACCCTTGAAATAATGTTCCCTTCATGGCCAATGAGATTCCAACATACTTGTAC TCCCACCATACTACCTGAGCAGCAGGGGAGCTCTAGGTCAGGAGAGGAAAGTACTGATGATGATTCAGGGTCAGCAGTAAACACCACAACAGTAACAACA GCTGATCAGAATCAACATAAAAGATCAGCACCCCCAGCCTCTTCTTCCTCCGATCATTTTCAGCAGCATCACCAAATGGAGATTTCAGCTGCTGTAAATG ACAAGCGGAAAGTGACACCATTGGAAAAGTCGCTGGATGCTAAGGCTCAGAGGCGTTTGGCTCAAAACAGAGAAGCTGCAAGGAAGAGCCGCCTTAGGAA AAAGGCCTATGTTCAGCAGCTGGAATCCAGCAGAATGAAGCTTGCCCAGTTGGAACAGGAGCTTCACAGAGCACGCCAGCAGGGCGTGTTCATAGGTGCA GCAAGTGGCAATCTTAGCTCTGCGGCGGCGATGTTTGATGCAGAGTATGGAAGGTGGGTGGAGGAGGACCTCCGGCAAATGTCTGAGCTCCGATCGGCGC TGCATTCTCAGTTACCGGATAGTGAGCTGAGGGAGGTTGTAGAGCGCTACATTTGTCATTATGACGAGATATTCAGACTCAAAGGAGCGACTGCGAAATC GGACGTGTTCCATCTAATCACCGGAATGTGGTGCACTTCGGCGGAGAGATGCTTCCTTTGGATGGGCGGGTTTAGGCCCTCTGACCTTATCAAGATGTTG ATATCCCAGTTAGATCCATTGACGGAGCAGCAAGTAATGGGGATATACAGTCTTCAACATTCGACGCAGCAGGCTGAAGAGGCACTGACTCAAGGGCTTG AGCAGCTGCAACATTCTCTCGTCGACACAATCGCAGCTCCGGCCGACTGGATGCAGCAGATGGCCATCGCTTTGGGCAAGGTTTCCAATCTCCAAAGCTT TCTTCGCCAGGCTGATAATTTGAGACAACAGACGATTCACCATCTGCGGCGGATCTTGACGGCGCGGCAGGCGGCGAGGTGTTTCTTGGTGATCGGAGAG TATTATAGACGACTAAGGGCACTGAGCTCGTTATGGGCATCTCGTCCCCGAGAGGTGATGAGCGAAGAGAAGTCGTGCCAAATGATCACAAGTGATGTAC AAATGGCGCAGCTTCCTCCCCCGCAGCACGCTCATTTCGCCAGCTTTTGA
AA sequence Show only first row Show all	>Lus10043387 pacid=23167936 polypeptide=Lus10043387 locus=Lus10043387.g ID=Lus10043387.BGIv1.0 annot-version=v1.0 MEQNNSHSDGPEFDFGELEEAIFLQGGVKIRNEERPLREGADAAAAAGKTLEIMFPSWPMRFQHTCTPTILPEQQGSSRSGEESTDDDSGSAVNTTTVTT ADQNQHKRSAPPASSSSDHFQQHHQMEISAAVNDKRKVTPLEKSLDAKAQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQELHRARQQGVFIGA ASGNLSSAAAMFDAEYGRWVEEDLRQMSELRSALHSQLPDSELREVVERYICHYDEIFRLKGATAKSDVFHLITGMWCTSAERCFLWMGGFRPSDLIKML ISQLDPLTEQQVMGIYSLQHSTQQAEEALTQGLEQLQHSLVDTIAAPADWMQQMAIALGKVSNLQSFLRQADNLRQQTIHHLRRILTARQAARCFLVIGE YYRRLRALSSLWASRPREVMSEEKSCQMITSDVQMAQLPPPQHAHFASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	0	1
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	4.5	0.8945
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	9.3	0.8861
AT4G36210			Protein of unknown function (D...		Lus10024307 [exp]	9.8	0.8336
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	12.4	0.8477
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	13.2	0.8492
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	16.9	0.8245
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	17.6	0.8871
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	31.2	0.8560
AT5G42710			unknown protein		Lus10016315 [exp]	36.0	0.8474
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	36.8	0.8359

Compare expression of checked genes

Lus10043387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.