Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27480 231 / 5e-77 Calcium-binding EF-hand family protein (.1) AT5G04170 216 / 2e-69 Calcium-binding EF-hand family protein (.1) AT3G10300 211 / 9e-68 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT4G37010 44 / 2e-05 CEN2 centrin 2 (.1.2) AT1G66400 39 / 0.001 CML23 calmodulin like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019545 [exp] 412 / 2e-148 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10035435 [exp] 212 / 3e-68 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 211 / 2e-67 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 209 / 4e-66 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 191 / 4e-62 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10009127 [exp] 44 / 3e-05 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10030134 [exp] 42 / 0.0002 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 42 / 0.0003 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10036667 [exp] 41 / 0.0004 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202200 [exp] 313 / 3e-109 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.009G163600 [exp] 312 / 9e-109 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.006G047300 [exp] 209 / 1e-67 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.016G043600 [exp] 207 / 1e-66 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10043389 pacid=23168232 polypeptide=Lus10043389 locus=Lus10043389.g ID=Lus10043389.BGIv1.0 annot-version=v1.0 ATGTCTAGTAATTCTTACGGTAGATCACACTCCTACGCGCCTTCAGCTCCTTCCCTTCCGGAACAAGTTGATCACCGACGGCAGCAGCAGCAGTATTACC AGCAGGGGCAGAGCAGTGCATCGGATTTCCCACCGGGGACCCACCCGGATGTGATCCGGAGCTTTCAGATGGTGGATGTTGACCGGAGTGGGTATATTGA TGAGAAGGAGCTTCAACAAGCTCTTTCTTCTGTCTATCAGAGGTTCCACATCAGAACCATTAGATTGCTCATGTTTCTCTTCAAGAATCCCCACGATTCT CTTCGAATTGGGCCTAAAGAATTTGCAGCTTTGTGGAGTTGCCTTGGTCAATGGCGTGCCATATTCGATAGATATGACAGAGACAGAAGTGGAAAGATCG ATTTGTTCGAATTGAGGGACGCACTTTATGGGCTTGGATATGCAGTCCCACCTTCTGTTCTGAAGATACTCATGGCTAAGTATGATGATGGAAGTGGCAG AAAGATTGAACTTAGTTTTGATAGTTTCGTTGAGTGCGGACTGATTTTGAAGGGATTAACAGACAAGTTTAAGGAGAAGGACAAGCGTTATGTAGGTCAA GCAACGTTCAACTATGATGAGTTCATGTGCACAGTCCTACCCTTTCTGGTGTCATATGATTGA
AA sequence Show only first row Show all	>Lus10043389 pacid=23168232 polypeptide=Lus10043389 locus=Lus10043389.g ID=Lus10043389.BGIv1.0 annot-version=v1.0 MSSNSYGRSHSYAPSAPSLPEQVDHRRQQQQYYQQGQSSASDFPPGTHPDVIRSFQMVDVDRSGYIDEKELQQALSSVYQRFHIRTIRLLMFLFKNPHDS LRIGPKEFAALWSCLGQWRAIFDRYDRDRSGKIDLFELRDALYGLGYAVPPSVLKILMAKYDDGSGRKIELSFDSFVECGLILKGLTDKFKEKDKRYVGQ ATFNYDEFMCTVLPFLVSYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	4.8	0.9709
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	5.3	0.9701
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	5.3	0.9643
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	5.7	0.9598
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	7.1	0.9647
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	7.7	0.9637
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	8.8	0.9613
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	9.2	0.9603
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	12.1	0.9428
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Lus10035979 [exp]	12.2	0.9324

Compare expression of checked genes

Lus10043389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.