Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52660 395 / 1e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 358 / 6e-120 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G28390 142 / 4e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 109 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 76 / 1e-14 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G71770 74 / 5e-14 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G23350 74 / 6e-14 PABP4, PAB4 poly(A) binding protein 4 (.1) AT4G36960 73 / 6e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 69 / 1e-12 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22760 67 / 2e-11 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034195 [exp] 679 / 0 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021351 [exp] 416 / 2e-142 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 353 / 4e-118 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002689 [exp] 352 / 1e-117 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 193 / 1e-56 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028162 [exp] 119 / 9e-29 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 109 / 4e-25 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 108 / 6e-25 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027886 [exp] 79 / 3e-15 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201900 [exp] 485 / 2e-169 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 472 / 3e-164 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G212400 [exp] 432 / 1e-148 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 429 / 7e-148 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 354 / 2e-118 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 345 / 9e-115 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G139700 [exp] 128 / 1e-31 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G116400 [exp] 128 / 1e-31 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 125 / 1e-30 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 124 / 2e-30 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043390 pacid=23168364 polypeptide=Lus10043390 locus=Lus10043390.g ID=Lus10043390.BGIv1.0 annot-version=v1.0 ATGCCAACAGAGAAGGAAAATGCATCAACAGCTTCTAACCGTGGGGAACCTGTTGACTCTGATGAGAAGATTGATCTTAATGAAGACAATGACCCTGAGG AGGCTATGGATGAAGAGATTGAATATGAGGAAGTGGAGGAAGAAGAAGAAGTCGAAGAATATGTAGAGGAGGAAATAGAAGTGGAAGAGGAAGGAGAAGA ATCAGAGGATGATAACAATAATAATGATATTCAAGATGGAGGCAATGGATATGATGATGAGAAGAAGAAGCATGCTGAGCTTCTTGCACTCCCACCTCAT GGTTCTGAAGTATACATGGGTGGCATTCCTCATAATACCACTCAAGAGGATTTGAGAGGTTTTTGTGAGTCTATTGGAGAGGTTACAGAGGTTCGTATGA TGAAGGGAAAGAATCCAACTGACAGTAAGATTTTTGCATTTGTGACCTTTAGAGGTGTGGACTTAGCATCAAAAGCTATTAAGGAGCTGAATAATTCTGA ATTCAAGGGTGCAAAAGTTAAATGTTCAACATCTCAAGCAAAGCATAGATTGTTCCTTGGAAATATTCCTAGGAGTTGGAATGACGAAGATTTAAGGAAG GTCATGAACGAGGTTGGGCCTGGAGTTACTTGCATCCAATTGGTGAAGGATCCAAGGAACACCAGCAACAACAGAGGTTTTGGCTTTATAGATTACTACA ATAATGCATGTGCTGAATATTCAAGGCAAAAGATGACGGATACAAAATTCAAGCTAGGTGATAATTCACCAACTGTGAGCTGGGCTGATTCTAGGAGCAC GAATTCTGGAGCTGCTACTCAGGTGAAGGCATTATATGTCAAGAATTTACCAAAAGATGTAACACAAGATCAGCTAAAGAAGCTATTTGAACATTATGGA CAAATCACTAAGGTGGTGTTGCCACCAGCTAAACAAGGGCAGGAGAACAATAGAATTGGTTTCATTCATTTTGCAGAGAGGTCCAGTGCTATGCAAGCAC TGGATAGCACTGAAAAATATGAATTAAATGGACAAACGTTGGAATGTTCTCTTGCAAAACCACAAATAGATCAGAAAGCTGTTGGTCTTTTAAACATTCA GAACGCTGGTATACTTCCAACTTTCCCACCCTATGCTGGTTACGGTTTGGGTGGAGCTCCCTATGGCTCCCTTGCAACAGGATATGGTGCTGCCCCCTTT GCACAGCCAGTGATTTATGGCACTGGACCATCTCCTTCAGGCATGGCAATGATGCCAATGCTTCTACCGGATGGCCAGATTGGATATATACTAGTACAGT ACCCAACAAAGTCTCTTGTGATTTGA
AA sequence Show only first row Show all	>Lus10043390 pacid=23168364 polypeptide=Lus10043390 locus=Lus10043390.g ID=Lus10043390.BGIv1.0 annot-version=v1.0 MPTEKENASTASNRGEPVDSDEKIDLNEDNDPEEAMDEEIEYEEVEEEEEVEEYVEEEIEVEEEGEESEDDNNNNDIQDGGNGYDDEKKKHAELLALPPH GSEVYMGGIPHNTTQEDLRGFCESIGEVTEVRMMKGKNPTDSKIFAFVTFRGVDLASKAIKELNNSEFKGAKVKCSTSQAKHRLFLGNIPRSWNDEDLRK VMNEVGPGVTCIQLVKDPRNTSNNRGFGFIDYYNNACAEYSRQKMTDTKFKLGDNSPTVSWADSRSTNSGAATQVKALYVKNLPKDVTQDQLKKLFEHYG QITKVVLPPAKQGQENNRIGFIHFAERSSAMQALDSTEKYELNGQTLECSLAKPQIDQKAVGLLNIQNAGILPTFPPYAGYGLGGAPYGSLATGYGAAPF AQPVIYGTGPSPSGMAMMPMLLPDGQIGYILVQYPTKSLVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	2.6	0.8620
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	3.5	0.8341
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	6.5	0.8211
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	7.9	0.8371
AT2G46200			unknown protein		Lus10000549 [exp]	9.4	0.8484
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	11.0	0.8154
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	13.4	0.8289
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	13.7	0.8165
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	14.5	0.8287
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	20.2	0.8139

Compare expression of checked genes

Lus10043390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.