Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 748 / 0 SD2-5 S-domain-2 5 (.1) AT5G35370 370 / 4e-115 S-locus lectin protein kinase family protein (.1) AT1G34300 354 / 8e-110 lectin protein kinase family protein (.1) AT5G24080 334 / 3e-106 Protein kinase superfamily protein (.1) AT2G19130 328 / 5e-100 S-locus lectin protein kinase family protein (.1) AT4G00340 318 / 1e-96 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 282 / 9e-87 Protein kinase superfamily protein (.1) AT5G60900 264 / 8e-77 RLK1 receptor-like protein kinase 1 (.1) AT4G21390 254 / 1e-72 B120 S-locus lectin protein kinase family protein (.1) AT4G11900 253 / 2e-72 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 729 / 0 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 724 / 0 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10034194 [exp] 426 / 5e-144 AT4G32300 224 / 4e-67 S-domain-2 5 (.1) Lus10039315 [exp] 398 / 6e-126 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10028067 [exp] 382 / 2e-120 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034193 [exp] 350 / 1e-116 AT4G32300 202 / 6e-61 S-domain-2 5 (.1) Lus10006052 [exp] 348 / 3e-107 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10042266 [exp] 325 / 3e-99 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 323 / 3e-98 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027300 [exp] 794 / 0 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 791 / 0 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.002G086500 [exp] 418 / 1e-133 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 407 / 1e-129 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 384 / 1e-120 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086400 [exp] 382 / 4e-120 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 373 / 7e-117 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 372 / 1e-116 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G119200 [exp] 353 / 1e-109 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G061900 [exp] 353 / 5e-108 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10043391 pacid=23168033 polypeptide=Lus10043391 locus=Lus10043391.g ID=Lus10043391.BGIv1.0 annot-version=v1.0 ATGGGTTTTGTTGAGAAGAGAGGCATTTTCCTGGTTTCCCGAAACTCAACTTTTGGATTTGGATTCTTCACTACTTTAGATGATCACCTCTTTGTGCTTG TTGTCGTCCATACCAAGAGTGGGAAAGTGGTTTGGACTGCTAACAGAGGATTATTAGTTAGTAATTCTGATAAATTTGTGTTTGATTCAAGCGGGAATGC TTCTCTTCATAGAGGGGAAGCTGTGGTTTGGACTTCTAATACAGGTGGAAGAAATGGAGAAAAAGTTGATTCAATGGAATTGACGGAGTCAGGGAACTTG GTCTTGCTTGACGGCGAAAGAAGGGTTCTTTGGGAGAGCTTTCGCCACCCAACAGATACCCTTTTACCTGGCCAGGAGTTCACAGAAGAAATGGCTCTCA AAAGTTTCCCAAACAAGAACAATCTCTCCAATTTTCTTCAGATAATATCTGGGGATCTGGTCTTGTATGCTGGGTATAGAACTCCTCAGGTTTATTGGTC TCTCAAACAGGACAGTCGAAGAACTACCAATAACACTGTTACAGGAGGCCAGATAGTTCATTCTGCTTCTTTAGTGTCTAATTCATGGAACTTTTATGAT AGCAAAAGATTGTTGCTTTGGCAGTTCAAATTCTCCAACAAAACTGATCCAAACTCTAGGTGGGCTGTGGTTTTAGCCTCCAATGGAGGCATTGGTTTCT ACAACCTTGAAATTGGAAGGTCAGTTATAGCTGAGCCAACTAAGATACCTCAAGTCTCTTGCAGTGTTCCGGAGCCTTGTGATCGGTACTATGTGTGCTT CTTCGAGGGCTGGTGCGAGTGCCCTGCGTCTCTTACTCAATTCGGGTGTAGGCCACCAGTCGCCTCGCCTTGTAATCGATCTGATGATAAAGCTGATCTG ATATTCGTCGGAGAGAAGCTGGATTATTTTTCACTTCGGTTTGCAATGCCTATCTTAACTAAATCAAACCTGAATGTTTGTAGGGAAGCTTGTCTTGCTA ATTGTTCATGTGTTGTGCTGTTCTTCGATCAGGCCCGGGGAAATTGTTTCATGTTTGATCAGCTCGGTAGCTTAAACCGCGCTCTTGATGGTTCTTTAGG CTATGCCTCGTACATGAAGATCTCCACAGCGAGTCTAAGAAGTAGCAATGGAAAAAATGGGGGGAAAGAAGCTGGAATTATTGCTATCATAGCTGTTGCA ACACTGATAGTTGTTGCTGGTTTACTCTATCTGGGAATATGGTTCCATTTTAAAAGGCAAAAACTATCTGCATTTCCTGATGAGAGCACAGAAGCAGGGG ATGATGATTTCTTTGGCGATTTCGCTAGAATGCCTGTGAGATACAGCCTGGAAGATCTTTCTCTAGCAACCAAAAACTTCACCACGAAAATCGGACAAGG GGGTTTCGGTTCTGTCTATCAAGGTGTCCTACCGGATGGCACTCAATTAGCTGTGAAGAAACTCGAAAGTGTCGGACAAGGCAAGAAAGAGTTCAAGGCT GAGGTGAGCATTATTGGTAGTGTGCATCATGTCCATCTGGTGAAGCTAAAAGGATTTTGTGCTGAGAGTTTCCATCGGCTTCTCGTTTATGAGTTCATGT CGAACGGATCGCTTGATAAATGGATCTTCAAGAGTAGTAGTAAAGAAGAAGAAGAGGGTGGTAATCTGTTGCTAGATTGGAACACAAGGTTCAACATTGC TCTAGGAACAGCCAAAGGTCTAGCATATCTCCACGAAGAGTGCGAGGTCAAAATCGTACACTGCGACATAAAGCCGCAGAATGTGCTCCTGGACGAGAAC TTCACCGCTAAAGTTTCAGACTTTGGATTGGCGAAGCTGATGAACCGCGAGGACAGCGGTGTTTACACGATGGTTCGAGGGACGAGAGGATACTTGGCTC CCGAATGGATATCGAACCATCCTATATCGGAGAAGAGCGATGTGTACAGCTATGGCATACTGCTTCTTGAGATAATTGGAGGCAGGAAGAATTACGAGTC TGAAGAAAGTTCGGAAAGGTCTCATTTCCCATCGTTCTCGTTCAAGATGTTCGAAGAAGGCAAGCTGAGAGACATCGTGGATCCAAAGCTGGTGATCGAC AATGAAAACGACATCGATGTAGTGAATGCAATCAAGATAGCATTGTGGTGCATTCAGGATGAGATGCAGCTAAGACCACCAATGACTAGTGTCGTCCAAA TGCTTCAAGGAATATGCGATGTTCCTGATCCTCCGACGCCATCTGAATCGTGCCCTCGGCCTTATACCAACTTCCTCAAGTGGAGTAGCAAAGAGGGGAA CAGTTCAGGGTTTCGCAATTACAATTACAACAACAGCAGCACGTTTGTGTCTGAGAGTCAGTTATCAGGTCCGAGATGA
AA sequence Show only first row Show all	>Lus10043391 pacid=23168033 polypeptide=Lus10043391 locus=Lus10043391.g ID=Lus10043391.BGIv1.0 annot-version=v1.0 MGFVEKRGIFLVSRNSTFGFGFFTTLDDHLFVLVVVHTKSGKVVWTANRGLLVSNSDKFVFDSSGNASLHRGEAVVWTSNTGGRNGEKVDSMELTESGNL VLLDGERRVLWESFRHPTDTLLPGQEFTEEMALKSFPNKNNLSNFLQIISGDLVLYAGYRTPQVYWSLKQDSRRTTNNTVTGGQIVHSASLVSNSWNFYD SKRLLLWQFKFSNKTDPNSRWAVVLASNGGIGFYNLEIGRSVIAEPTKIPQVSCSVPEPCDRYYVCFFEGWCECPASLTQFGCRPPVASPCNRSDDKADL IFVGEKLDYFSLRFAMPILTKSNLNVCREACLANCSCVVLFFDQARGNCFMFDQLGSLNRALDGSLGYASYMKISTASLRSSNGKNGGKEAGIIAIIAVA TLIVVAGLLYLGIWFHFKRQKLSAFPDESTEAGDDDFFGDFARMPVRYSLEDLSLATKNFTTKIGQGGFGSVYQGVLPDGTQLAVKKLESVGQGKKEFKA EVSIIGSVHHVHLVKLKGFCAESFHRLLVYEFMSNGSLDKWIFKSSSKEEEEGGNLLLDWNTRFNIALGTAKGLAYLHEECEVKIVHCDIKPQNVLLDEN FTAKVSDFGLAKLMNREDSGVYTMVRGTRGYLAPEWISNHPISEKSDVYSYGILLLEIIGGRKNYESEESSERSHFPSFSFKMFEEGKLRDIVDPKLVID NENDIDVVNAIKIALWCIQDEMQLRPPMTSVVQMLQGICDVPDPPTPSESCPRPYTNFLKWSSKEGNSSGFRNYNYNNSSTFVSESQLSGPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10043391 [exp]	0	1
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	1.0	0.8637
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	2.0	0.8537
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	6.9	0.8078
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	7.7	0.8066
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	11.2	0.7651
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	13.3	0.7857
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	14.6	0.8096
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	19.6	0.7579
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	24.6	0.7959
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	25.9	0.7731

Compare expression of checked genes

Lus10043391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.