Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18970 114 / 1e-31 GLP4 germin-like protein 4 (.1) AT1G18980 106 / 1e-28 RmlC-like cupins superfamily protein (.1) AT3G05950 104 / 7e-28 RmlC-like cupins superfamily protein (.1) AT1G09560 103 / 1e-27 GLP5 germin-like protein 5 (.1) AT3G04200 103 / 2e-27 RmlC-like cupins superfamily protein (.1) AT3G04150 101 / 1e-26 RmlC-like cupins superfamily protein (.1.2) AT5G38910 100 / 2e-26 RmlC-like cupins superfamily protein (.1) AT1G02335 97 / 3e-25 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G38960 97 / 4e-25 RmlC-like cupins superfamily protein (.1) AT3G10080 96 / 2e-24 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034191 [exp] 288 / 4e-100 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10004856 [exp] 178 / 6e-57 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 172 / 1e-54 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004855 [exp] 172 / 1e-54 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 169 / 2e-53 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 165 / 6e-52 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 163 / 3e-51 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004858 [exp] 144 / 2e-43 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10035293 [exp] 105 / 4e-28 AT5G39110 226 / 4e-75 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 176 / 8e-56 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 173 / 6e-55 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.008G016700 [exp] 171 / 3e-54 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240500 [exp] 171 / 4e-54 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240700 [exp] 169 / 2e-53 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 164 / 2e-51 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G084300 [exp] 161 / 3e-50 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.013G116500 [exp] 126 / 1e-36 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.011G163216 [exp] 108 / 2e-29 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 108 / 2e-29 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10043393 pacid=23168138 polypeptide=Lus10043393 locus=Lus10043393.g ID=Lus10043393.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTAACAGCTGCTCATCTTCTCAAGCGATTTCATTCTCCCCGACAACCAACCGAGGTTGATGCATCGTTCTTCACTTACGCGGGAGCTCGAG GCATTTTGGATTCAGACAACCCTCCTTCAAGTTTCACAGTAACAGAAGTGAGCATTACCGAGTTTCCTGCTCTTAATGGACAAGGTGTTTCCTATGCTGT TCTTCAGTTACCAGCCGGATCTACTTATCCTCCTCACAGTCATCCTCGTGCTTCCGAGATCCTTCTAGTATTCCGTGGATGTGTTGAGGTAGGACTTGTC GTAGCAAACAACTGTCTCTACAATCAGACACTATATGTGGGGGACATGTTTGTTTTTCCCAAGGGACTTGTTCATTTTGCATTCAACGGTGGGGATGAAG CTGCTACTGCACTTTCTTCATTCAGCAGCGCGAGTCCAGGAACTGTTTCGCTTCCAGATTCGCTTTTCGCTAGCAACATCGGCGATGCCATCTTGGCTAG TGCCTTCAAGACCAACGTGAACATCATTCAGGCCATTAAGGATGGTTTGCAGTACAATCATCCCCCGGAAGATGGATGA
AA sequence Show only first row Show all	>Lus10043393 pacid=23168138 polypeptide=Lus10043393 locus=Lus10043393.g ID=Lus10043393.BGIv1.0 annot-version=v1.0 MASLTAAHLLKRFHSPRQPTEVDASFFTYAGARGILDSDNPPSSFTVTEVSITEFPALNGQGVSYAVLQLPAGSTYPPHSHPRASEILLVFRGCVEVGLV VANNCLYNQTLYVGDMFVFPKGLVHFAFNGGDEAATALSSFSSASPGTVSLPDSLFASNIGDAILASAFKTNVNIIQAIKDGLQYNHPPEDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	1.7	0.9281
AT5G54165			unknown protein		Lus10023231 [exp]	2.4	0.9260
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	4.5	0.9014
AT1G76070			unknown protein		Lus10021840 [exp]	5.7	0.8921
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	6.0	0.8983
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	6.5	0.8715
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	6.9	0.8842
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	8.1	0.8709
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	8.5	0.9057
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	9.7	0.8759

Compare expression of checked genes

Lus10043393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.